RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CWC27Q6UX04 472 aaKnown RBP17.12■□□□□ 0.33
SKA1-202ENST00000398452 PI16Q6UXB8 463 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 ERICH6Q7L0X2 663 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 LARGE2Q8N3Y3 721 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 ANTXR1Q9H6X2 564 aa17.12■□□□□ 0.33
SKA1-202ENST00000398452 RNF113AO15541 343 aaKnown RBP17.11■□□□□ 0.33
SKA1-202ENST00000398452 LMNB1P20700 586 aa17.11■□□□□ 0.33
SKA1-202ENST00000398452 AOC3Q16853 763 aa17.11■□□□□ 0.33
SKA1-202ENST00000398452 RAD50Q92878 1312 aa17.11■□□□□ 0.33
SKA1-202ENST00000398452 IRS2Q9Y4H2 1338 aa17.11■□□□□ 0.33
SKA1-202ENST00000398452 SLC9C2Q5TAH2 1124 aa17.1■□□□□ 0.33
SKA1-202ENST00000398452 NIM1KQ8IY84 436 aa17.1■□□□□ 0.33
SKA1-202ENST00000398452 JDP2Q8WYK2 163 aa17.1■□□□□ 0.33
SKA1-202ENST00000398452 PIH1D3Q9NQM4 214 aaKnown RBP17.1■□□□□ 0.33
SKA1-202ENST00000398452 CCDC88AQ3V6T2 1871 aa17.1■□□□□ 0.33
SKA1-202ENST00000398452 CEP350Q5VT06 3117 aa17.1■□□□□ 0.33
SKA1-202ENST00000398452 NFKBIEO00221 500 aa17.09■□□□□ 0.33
SKA1-202ENST00000398452 ECE2O60344 883 aa17.09■□□□□ 0.33
SKA1-202ENST00000398452 LDHBP07195 334 aaKnown RBP17.09■□□□□ 0.33
SKA1-202ENST00000398452 IARSP41252 1262 aaKnown RBP17.09■□□□□ 0.33
SKA1-202ENST00000398452 MNX1P50219 401 aaPredicted RBP17.09■□□□□ 0.33
SKA1-202ENST00000398452 GTF2IP78347 998 aa17.09■□□□□ 0.33
SKA1-202ENST00000398452 NMIQ13287 307 aaPredicted RBP17.09■□□□□ 0.33
SKA1-202ENST00000398452 TMED8Q6PL24 325 aaPredicted RBP17.09■□□□□ 0.33
SKA1-202ENST00000398452 DZIP1Q86YF9 867 aaKnown RBP17.09■□□□□ 0.33
SKA1-202ENST00000398452 ESYT1Q9BSJ8 1104 aa17.09■□□□□ 0.33
SKA1-202ENST00000398452 DBNDD1Q9H9R9 158 aa17.09■□□□□ 0.33
SKA1-202ENST00000398452 HELLSQ9NRZ9 838 aa17.09■□□□□ 0.33
SKA1-202ENST00000398452 AK9Q5TCS8 1911 aa17.09■□□□□ 0.33
SKA1-202ENST00000398452 SALL1Q9NSC2 1324 aa17.08■□□□□ 0.32
SKA1-202ENST00000398452 MCCP23508 829 aa17.08■□□□□ 0.32
SKA1-202ENST00000398452 GSTO1P78417 241 aa17.08■□□□□ 0.32
SKA1-202ENST00000398452 UBE3CQ15386 1083 aa17.08■□□□□ 0.32
SKA1-202ENST00000398452 TTLL5Q6EMB2 1281 aa17.08■□□□□ 0.32
SKA1-202ENST00000398452 SLF2Q8IX21 1173 aa17.08■□□□□ 0.32
SKA1-202ENST00000398452 APPBP2Q92624 585 aa17.08■□□□□ 0.32
SKA1-202ENST00000398452 NOL10Q9BSC4 688 aaKnown RBP17.08■□□□□ 0.32
SKA1-202ENST00000398452 ZNF277Q9NRM2 450 aaPredicted RBP17.08■□□□□ 0.32
SKA1-202ENST00000398452 JAG2Q9Y219 1238 aa17.08■□□□□ 0.32
SKA1-202ENST00000398452 HTRA3P83110 453 aa17.07■□□□□ 0.32
SKA1-202ENST00000398452 MCMDC2Q4G0Z9 681 aa17.07■□□□□ 0.32
SKA1-202ENST00000398452 MFSD14BQ5SR56 506 aa17.07■□□□□ 0.32
SKA1-202ENST00000398452 NAA16Q6N069 864 aaPredicted RBP17.07■□□□□ 0.32
SKA1-202ENST00000398452 MAGEB6Q8N7X4 407 aa17.07■□□□□ 0.32
SKA1-202ENST00000398452 ANO2Q9NQ90 1003 aa17.07■□□□□ 0.32
SKA1-202ENST00000398452 LTBP1Q14766 1721 aa17.07■□□□□ 0.32
SKA1-202ENST00000398452 DUOX1Q9NRD9 1551 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 FAM205AQ6ZU69 1335 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 USP17L3A6NCW0 530 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 USP17L4A6NCW7 530 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 SGSM2O43147 1006 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 LDHCP07864 332 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 PDE6AP16499 860 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 ADD2P35612 726 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 APLP1P51693 650 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 ZMYM1Q5SVZ6 1142 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 USP17L1Q7RTZ2 530 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 RBM46Q8TBY0 533 aaKnown RBP17.06■□□□□ 0.32
SKA1-202ENST00000398452 SUGT1Q9Y2Z0 365 aa17.06■□□□□ 0.32
SKA1-202ENST00000398452 MAST3O60307 1309 aa17.05■□□□□ 0.32
SKA1-202ENST00000398452 ZNF532Q9HCE3 1301 aa17.05■□□□□ 0.32
SKA1-202ENST00000398452 LTBP3Q9NS15 1303 aa17.05■□□□□ 0.32
SKA1-202ENST00000398452 CYP7A1P22680 504 aa17.05■□□□□ 0.32
SKA1-202ENST00000398452 STRIP1Q5VSL9 837 aa17.05■□□□□ 0.32
SKA1-202ENST00000398452 AIDAQ96BJ3 306 aa17.05■□□□□ 0.32
SKA1-202ENST00000398452 FAM227BQ96M60 508 aa17.05■□□□□ 0.32
SKA1-202ENST00000398452 A0A0D9SFI3 127 aa17.04■□□□□ 0.32
SKA1-202ENST00000398452 GLTPD2A6NH11 291 aa17.04■□□□□ 0.32
SKA1-202ENST00000398452 ZNRF3Q9ULT6 936 aa17.04■□□□□ 0.32
SKA1-202ENST00000398452 SNED1Q8TER0 1413 aa17.04■□□□□ 0.32
SKA1-202ENST00000398452 AKAP11Q9UKA4 1901 aa17.04■□□□□ 0.32
SKA1-202ENST00000398452 MYH13Q9UKX3 1938 aa17.04■□□□□ 0.32
SKA1-202ENST00000398452 CCDC171Q6TFL3 1326 aa17.03■□□□□ 0.32
SKA1-202ENST00000398452 MYO3BQ8WXR4 1341 aa17.03■□□□□ 0.32
SKA1-202ENST00000398452 EPB41L2O43491 1005 aaKnown RBP17.03■□□□□ 0.32
SKA1-202ENST00000398452 POTEIP0CG38 1075 aa17.03■□□□□ 0.32
SKA1-202ENST00000398452 COL1A1P02452 1464 aaPredicted RBP17.03■□□□□ 0.32
SKA1-202ENST00000398452 BAG3O95817 575 aa17.02■□□□□ 0.32
SKA1-202ENST00000398452 PRDX5P30044 214 aa17.02■□□□□ 0.32
SKA1-202ENST00000398452 EIF6P56537 245 aaKnown RBP17.02■□□□□ 0.32
SKA1-202ENST00000398452 FKBP1AP62942 108 aaKnown RBP17.02■□□□□ 0.32
SKA1-202ENST00000398452 MECOMQ03112 1051 aa17.02■□□□□ 0.32
SKA1-202ENST00000398452 DPY19L2Q6NUT2 758 aa17.02■□□□□ 0.32
SKA1-202ENST00000398452 CERS3Q8IU89 383 aa17.02■□□□□ 0.32
SKA1-202ENST00000398452 C22orf23Q9BZE7 217 aa17.02■□□□□ 0.32
SKA1-202ENST00000398452 MAGEB6P1A0A0J9YX57 407 aa17.01■□□□□ 0.31
SKA1-202ENST00000398452 VEGFAP15692 232 aaPredicted RBP17.01■□□□□ 0.31
SKA1-202ENST00000398452 TNIP1Q15025 636 aa17.01■□□□□ 0.31
SKA1-202ENST00000398452 NSUN4Q96CB9 384 aaKnown RBP17.01■□□□□ 0.31
SKA1-202ENST00000398452 DDRGK1Q96HY6 314 aa17.01■□□□□ 0.31
SKA1-202ENST00000398452 ZC3H4Q9UPT8 1303 aaKnown RBP17■□□□□ 0.31
SKA1-202ENST00000398452 F8W031 263 aaPredicted RBP17■□□□□ 0.31
SKA1-202ENST00000398452 GPAA1O43292 621 aa17■□□□□ 0.31
SKA1-202ENST00000398452 SEC24BO95487 1268 aa17■□□□□ 0.31
SKA1-202ENST00000398452 APPP05067 770 aa17■□□□□ 0.31
SKA1-202ENST00000398452 GNAT2P19087 354 aa17■□□□□ 0.31
SKA1-202ENST00000398452 FSTL1Q12841 308 aa17■□□□□ 0.31
SKA1-202ENST00000398452 RNF20Q5VTR2 975 aa17■□□□□ 0.31
SKA1-202ENST00000398452 LHX8Q68G74 356 aa17■□□□□ 0.31
SKA1-202ENST00000398452 CIAPIN1Q6FI81 312 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms