RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 HIBADHP31937 336 aaKnown RBP29.74■■■□□ 2.35
SHOX2-201ENST00000389589 IFNL3Q8IZI9 196 aa29.74■■■□□ 2.35
SHOX2-201ENST00000389589 CHAMP1Q96JM3 812 aa29.74■■■□□ 2.35
SHOX2-201ENST00000389589 ARMT1Q9H993 441 aa29.74■■■□□ 2.35
SHOX2-201ENST00000389589 ABCF2Q9UG63 623 aa29.74■■■□□ 2.35
SHOX2-201ENST00000389589 CACNA1SQ13698 1873 aa29.74■■■□□ 2.35
SHOX2-201ENST00000389589 SCRN1Q12765 414 aa29.73■■■□□ 2.35
SHOX2-201ENST00000389589 RAI14Q9P0K7 980 aa29.73■■■□□ 2.35
SHOX2-201ENST00000389589 PRC1O43663 620 aa29.73■■■□□ 2.35
SHOX2-201ENST00000389589 MBD3O95983 291 aa29.73■■■□□ 2.35
SHOX2-201ENST00000389589 NACAP1Q9BZK3 213 aa29.73■■■□□ 2.35
SHOX2-201ENST00000389589 NAPBQ9H115 298 aa29.73■■■□□ 2.35
SHOX2-201ENST00000389589 VPS37CA5D8V6 355 aaPredicted RBP29.72■■■□□ 2.35
SHOX2-201ENST00000389589 GOLGA6L3A6NEY3 463 aa29.72■■■□□ 2.35
SHOX2-201ENST00000389589 CYP7A1P22680 504 aa29.72■■■□□ 2.35
SHOX2-201ENST00000389589 CRY2Q49AN0 593 aa29.72■■■□□ 2.35
SHOX2-201ENST00000389589 RPGRQ92834 1020 aaKnown RBP29.72■■■□□ 2.35
SHOX2-201ENST00000389589 NBPF3Q9H094 633 aa29.72■■■□□ 2.35
SHOX2-201ENST00000389589 LEMD3Q9Y2U8 911 aa29.72■■■□□ 2.35
SHOX2-201ENST00000389589 EP400Q96L91 3159 aa29.72■■■□□ 2.35
SHOX2-201ENST00000389589 CHST3Q7LGC8 479 aa29.72■■■□□ 2.35
SHOX2-201ENST00000389589 CCDC88AQ3V6T2 1871 aa29.71■■■□□ 2.35
SHOX2-201ENST00000389589 FSD2A1L4K1 749 aa29.71■■■□□ 2.35
SHOX2-201ENST00000389589 TMEM87AQ8NBN3 555 aa29.71■■■□□ 2.35
SHOX2-201ENST00000389589 SMARCC2Q8TAQ2 1214 aa29.71■■■□□ 2.35
SHOX2-201ENST00000389589 TIAM2Q8IVF5 1701 aa29.71■■■□□ 2.35
SHOX2-201ENST00000389589 GSG1L2A8MUP6 293 aa29.7■■■□□ 2.35
SHOX2-201ENST00000389589 LCORLQ8N3X6 602 aa29.7■■■□□ 2.35
SHOX2-201ENST00000389589 EPB41L4AQ9HCS5 686 aaPredicted RBP29.7■■■□□ 2.35
SHOX2-201ENST00000389589 PDIA3P30101 505 aaKnown RBP29.7■■■□□ 2.34
SHOX2-201ENST00000389589 TMED8Q6PL24 325 aaPredicted RBP29.7■■■□□ 2.34
SHOX2-201ENST00000389589 TBC1D10CQ8IV04 446 aa29.7■■■□□ 2.34
SHOX2-201ENST00000389589 SLC4A4Q9Y6R1 1079 aa29.7■■■□□ 2.34
SHOX2-201ENST00000389589 NCLP19338 710 aaKnown RBP29.69■■■□□ 2.34
SHOX2-201ENST00000389589 KLRK1P26718 216 aa29.69■■■□□ 2.34
SHOX2-201ENST00000389589 HMGN5P82970 282 aaKnown RBP29.69■■■□□ 2.34
SHOX2-201ENST00000389589 KIF3AQ9Y496 699 aa29.69■■■□□ 2.34
SHOX2-201ENST00000389589 MAST2Q6P0Q8 1798 aa29.69■■■□□ 2.34
SHOX2-201ENST00000389589 GPT2Q8TD30 523 aa29.68■■■□□ 2.34
SHOX2-201ENST00000389589 RBM17Q96I25 401 aaKnown RBP29.68■■■□□ 2.34
SHOX2-201ENST00000389589 ANKIB1Q9P2G1 1089 aa29.68■■■□□ 2.34
SHOX2-201ENST00000389589 XDHP47989 1333 aa29.68■■■□□ 2.34
SHOX2-201ENST00000389589 IRS2Q9Y4H2 1338 aa29.68■■■□□ 2.34
SHOX2-201ENST00000389589 ANTXR2P58335 489 aa29.68■■■□□ 2.34
SHOX2-201ENST00000389589 TFCP2L1Q9NZI6 479 aa29.68■■■□□ 2.34
SHOX2-201ENST00000389589 MAGEB6P1A0A0J9YX57 407 aa29.67■■■□□ 2.34
SHOX2-201ENST00000389589 JAK2O60674 1132 aa29.67■■■□□ 2.34
SHOX2-201ENST00000389589 FOXD4L6Q3SYB3 417 aaPredicted RBP29.67■■■□□ 2.34
SHOX2-201ENST00000389589 FOXD4L3Q6VB84 417 aaPredicted RBP29.67■■■□□ 2.34
SHOX2-201ENST00000389589 POLRMTO00411 1230 aaKnown RBP29.67■■■□□ 2.34
SHOX2-201ENST00000389589 DTNBO60941 627 aa29.67■■■□□ 2.34
SHOX2-201ENST00000389589 CSPP1Q1MSJ5 1256 aa29.67■■■□□ 2.34
SHOX2-201ENST00000389589 NSUN7Q8NE18 718 aaKnown RBP29.67■■■□□ 2.34
SHOX2-201ENST00000389589 IGSF3O75054 1194 aa29.66■■■□□ 2.34
SHOX2-201ENST00000389589 APBA3O96018 575 aa29.66■■■□□ 2.34
SHOX2-201ENST00000389589 TDO2P48775 406 aa29.66■■■□□ 2.34
SHOX2-201ENST00000389589 NAA16Q6N069 864 aaPredicted RBP29.66■■■□□ 2.34
SHOX2-201ENST00000389589 MIGA1Q8NAN2 632 aa29.66■■■□□ 2.34
SHOX2-201ENST00000389589 FAM184AQ8NB25 1140 aa29.66■■■□□ 2.34
SHOX2-201ENST00000389589 CNNM2Q9H8M5 875 aa29.66■■■□□ 2.34
SHOX2-201ENST00000389589 RXRBP28702 533 aa29.65■■■□□ 2.34
SHOX2-201ENST00000389589 DDR1Q08345 913 aa29.65■■■□□ 2.34
SHOX2-201ENST00000389589 USP48Q86UV5 1035 aa29.65■■■□□ 2.34
SHOX2-201ENST00000389589 NAP1L2Q9ULW6 460 aaPredicted RBP29.65■■■□□ 2.34
SHOX2-201ENST00000389589 CAVIN1Q6NZI2 390 aaKnown RBP29.65■■■□□ 2.34
SHOX2-201ENST00000389589 PRKAB2O43741 272 aa29.64■■■□□ 2.34
SHOX2-201ENST00000389589 C15orf52Q6ZUT6 534 aaKnown RBP29.64■■■□□ 2.34
SHOX2-201ENST00000389589 CDC37L1Q7L3B6 337 aa29.64■■■□□ 2.34
SHOX2-201ENST00000389589 ADGRA1Q86SQ6 560 aa29.64■■■□□ 2.34
SHOX2-201ENST00000389589 AKT1S1Q96B36 256 aa29.64■■■□□ 2.34
SHOX2-201ENST00000389589 CNPY2Q9Y2B0 182 aa29.64■■■□□ 2.34
SHOX2-201ENST00000389589 KIAA1551Q9HCM1 1747 aa29.64■■■□□ 2.34
SHOX2-201ENST00000389589 DHX16O60231 1041 aaKnown RBP29.64■■■□□ 2.33
SHOX2-201ENST00000389589 HOXA10P31260 410 aaPredicted RBP29.64■■■□□ 2.33
SHOX2-201ENST00000389589 CCT2P78371 535 aaKnown RBP29.64■■■□□ 2.33
SHOX2-201ENST00000389589 TMEM87BQ96K49 555 aa29.64■■■□□ 2.33
SHOX2-201ENST00000389589 RGPD3A6NKT7 1758 aaPredicted RBP29.63■■■□□ 2.33
SHOX2-201ENST00000389589 RGPD4Q7Z3J3 1758 aa29.63■■■□□ 2.33
SHOX2-201ENST00000389589 FLAD1Q8NFF5 587 aa29.63■■■□□ 2.33
SHOX2-201ENST00000389589 ANGEL1Q9UNK9 670 aaKnown RBP29.63■■■□□ 2.33
SHOX2-201ENST00000389589 KLF18A0A0U1RQI7 1052 aa29.62■■■□□ 2.33
SHOX2-201ENST00000389589 PTPDC1A2A3K4 754 aa29.62■■■□□ 2.33
SHOX2-201ENST00000389589 BBOX1O75936 387 aa29.62■■■□□ 2.33
SHOX2-201ENST00000389589 CTDNEP1O95476 244 aa29.62■■■□□ 2.33
SHOX2-201ENST00000389589 AKNAD1Q5T1N1 836 aa29.62■■■□□ 2.33
SHOX2-201ENST00000389589 NLGN1Q8N2Q7 840 aa29.62■■■□□ 2.33
SHOX2-201ENST00000389589 RIOK1Q9BRS2 568 aaKnown RBP29.62■■■□□ 2.33
SHOX2-201ENST00000389589 KRT23Q9C075 422 aa29.62■■■□□ 2.33
SHOX2-201ENST00000389589 GPHNQ9NQX3 736 aaPredicted RBP29.62■■■□□ 2.33
SHOX2-201ENST00000389589 KLRG2A4D1S0 409 aaPredicted RBP29.62■■■□□ 2.33
SHOX2-201ENST00000389589 SPTY2D1Q68D10 685 aaPredicted RBP29.62■■■□□ 2.33
SHOX2-201ENST00000389589 NSUN4Q96CB9 384 aaKnown RBP29.62■■■□□ 2.33
SHOX2-201ENST00000389589 NRXN2Q9P2S2 1712 aa29.61■■■□□ 2.33
SHOX2-201ENST00000389589 SALL1Q9NSC2 1324 aa29.61■■■□□ 2.33
SHOX2-201ENST00000389589 ZNF827Q17R98 1081 aa29.61■■■□□ 2.33
SHOX2-201ENST00000389589 TXNRD3Q86VQ6 643 aa29.61■■■□□ 2.33
SHOX2-201ENST00000389589 STAG1Q8WVM7 1258 aa29.61■■■□□ 2.33
SHOX2-201ENST00000389589 DDX11Q96FC9 970 aa29.61■■■□□ 2.33
SHOX2-201ENST00000389589 CRAMP1Q96RY5 1269 aa29.61■■■□□ 2.33
SHOX2-201ENST00000389589 GDPD2Q9HCC8 539 aa29.61■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms