RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 PAFAH1B1P43034 410 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 ARMC3Q5W041 872 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 LRGUKQ96M69 825 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 CNNM2Q9H8M5 875 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 BICDL2A1A5D9 508 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 C1orf131Q8NDD1 294 aaKnown RBP4.24□□□□□ -1.73
SYNE1-207ENST00000367255 SENP1Q9P0U3 644 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 IKBKGQ9Y6K9 419 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 HSP90AA4PQ58FG1 418 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 FAM192AQ9GZU8 254 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 TTC21BQ7Z4L5 1316 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 SERPINB4P48594 390 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 PRPF4BQ13523 1007 aaKnown RBP4.24□□□□□ -1.73
SYNE1-207ENST00000367255 TMEM87AQ8NBN3 555 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 KLHDC4Q8TBB5 520 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 SH3GL3Q99963 347 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 ANKRD2Q9GZV1 360 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 TRAK1Q9UPV9 953 aa4.24□□□□□ -1.73
SYNE1-207ENST00000367255 ANKRD13AQ8IZ07 590 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ST13P5Q8NFI4 369 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 TEKT2Q9UIF3 430 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 STK3Q13188 491 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 CCAR1Q8IX12 1150 aaKnown RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 IFT140Q96RY7 1462 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 hCG_1984214I3L0E3 225 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 CCDC158Q5M9N0 1113 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 CRELD2Q6UXH1 353 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 KCND1Q9NSA2 647 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ATP2C2O75185 946 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 TROVE2P10155 538 aaKnown RBP eCLIP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 OLFM3Q96PB7 478 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 PSME1Q06323 249 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 CUEDC2Q9H467 287 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ANLNQ9NQW6 1124 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 RNF10Q8N5U6 811 aaKnown RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 NUP58Q9BVL2 599 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ZEB2O60315 1214 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ALDH1L1O75891 902 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 CPA3P15088 417 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 LRSAM1Q6UWE0 723 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 DIS3Q9Y2L1 958 aaKnown RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ASZ1Q8WWH4 475 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 TAF4BQ92750 862 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 DDX27Q96GQ7 796 aaKnown RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 NUGGCQ68CJ6 796 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 GTF2A1P52655 376 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 DMTNQ08495 405 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 RAB11FIP4Q86YS3 637 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 FAM71BQ8TC56 605 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 UQCRHLA0A096LP55 91 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ARHGAP10A1A4S6 786 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 UQCRHP07919 91 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 EXOC1Q9NV70 894 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 SAMD15Q9P1V8 674 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 MTUS1Q9ULD2 1270 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 TARSL2A2RTX5 802 aaKnown RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 RAB3IL1Q8TBN0 382 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 RAB3IPQ96QF0 476 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 VPS37BQ9H9H4 285 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 RASGRF2O14827 1237 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 CFAP73A6NFT4 308 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 GNAT2P19087 354 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 RSPH10B2B2RC85 870 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 RSPH10BP0C881 870 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 MCM6Q14566 821 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 TRIM42Q8IWZ5 723 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 TNMDQ9H2S6 317 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 GOPCQ9HD26 462 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 PARD3Q8TEW0 1356 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 CTAGE9A4FU28 777 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 PEX14O75381 377 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ATP2A2P16615 1042 aaKnown RBP4.23□□□□□ -1.73
SYNE1-207ENST00000367255 BLVRAP53004 296 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 NNTQ13423 1086 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 SPZ1Q9BXG8 430 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ZFYVE9O95405 1425 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 STK4Q13043 487 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 MMS22LQ6ZRQ5 1243 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 PLA2R1Q13018 1463 aa4.23□□□□□ -1.73
SYNE1-207ENST00000367255 ZBTB22O15209 634 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 TTKP33981 857 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 NCBP1Q09161 790 aaKnown RBP4.22□□□□□ -1.73
SYNE1-207ENST00000367255 FHOD1Q9Y613 1164 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 RFX7Q2KHR2 1363 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 GAPVD1Q14C86 1478 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 NANOGNBQ7Z5D8 188 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 PASD1Q8IV76 773 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 BBOF1Q8ND07 529 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 CPLX3Q8WVH0 158 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 HNRNPLLQ8WVV9 542 aaKnown RBP4.22□□□□□ -1.73
SYNE1-207ENST00000367255 STAMBPL1Q96FJ0 436 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 MAGEC2Q9UBF1 373 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-207ENST00000367255 RGS12O14924 1447 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 RFX1P22670 979 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 YTHDF3Q7Z739 585 aaKnown RBP4.22□□□□□ -1.73
SYNE1-207ENST00000367255 SRRM1Q8IYB3 904 aaKnown RBP4.22□□□□□ -1.73
SYNE1-207ENST00000367255 TTC16Q8NEE8 873 aa4.22□□□□□ -1.73
SYNE1-207ENST00000367255 LEO1Q8WVC0 666 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-207ENST00000367255 SLU7O95391 586 aaKnown RBP4.22□□□□□ -1.73
SYNE1-207ENST00000367255 MAP2K2P36507 400 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms