RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 SPATA5Q8NB90 893 aa20.52■□□□□ 0.88
SDCBP-201ENST00000260130 ZNF512BQ96KM6 892 aaPredicted RBP20.52■□□□□ 0.88
SDCBP-201ENST00000260130 MCAMP43121 646 aa20.52■□□□□ 0.88
SDCBP-201ENST00000260130 HDLBPQ00341 1268 aaKnown RBP20.52■□□□□ 0.88
SDCBP-201ENST00000260130 ZGPATQ8N5A5 531 aaKnown RBP20.52■□□□□ 0.88
SDCBP-201ENST00000260130 GLIS2Q9BZE0 524 aaPredicted RBP20.52■□□□□ 0.88
SDCBP-201ENST00000260130 BCL11AQ9H165 835 aa20.52■□□□□ 0.88
SDCBP-201ENST00000260130 PCDHAC2Q9Y5I4 1007 aa20.52■□□□□ 0.88
SDCBP-201ENST00000260130 IFIT2P09913 472 aaKnown RBP20.51■□□□□ 0.87
SDCBP-201ENST00000260130 MRIQ9BWK5 157 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 MAST3O60307 1309 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 SPDYE2BA6NHP3 402 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 LDHBP07195 334 aaKnown RBP20.51■□□□□ 0.87
SDCBP-201ENST00000260130 SPDYE6P0CI01 402 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 PRDX5P30044 214 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 CRKP46108 304 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 APLP1P51693 650 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 HDAC1Q13547 482 aaPredicted RBP20.51■□□□□ 0.87
SDCBP-201ENST00000260130 PI16Q6UXB8 463 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 KRT26Q7Z3Y9 468 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 USP48Q86UV5 1035 aa20.51■□□□□ 0.87
SDCBP-201ENST00000260130 PRMT6Q96LA8 375 aaPredicted RBP20.51■□□□□ 0.87
SDCBP-201ENST00000260130 ABCF2Q9UG63 623 aa20.5■□□□□ 0.87
SDCBP-201ENST00000260130 PITPNM2Q9BZ72 1349 aa20.5■□□□□ 0.87
SDCBP-201ENST00000260130 TRAF5O00463 557 aa20.49■□□□□ 0.87
SDCBP-201ENST00000260130 SULF1Q8IWU6 871 aa20.49■□□□□ 0.87
SDCBP-201ENST00000260130 TEKT1Q969V4 418 aa20.49■□□□□ 0.87
SDCBP-201ENST00000260130 SMARCA5O60264 1052 aaPredicted RBP20.49■□□□□ 0.87
SDCBP-201ENST00000260130 SPTY2D1Q68D10 685 aaPredicted RBP20.49■□□□□ 0.87
SDCBP-201ENST00000260130 SNRKQ9NRH2 765 aa20.49■□□□□ 0.87
SDCBP-201ENST00000260130 MYO1BO43795 1136 aa20.48■□□□□ 0.87
SDCBP-201ENST00000260130 FMR1Q06787 632 aaKnown RBP eCLIP20.48■□□□□ 0.87
SDCBP-201ENST00000260130 MYH13Q9UKX3 1938 aa20.48■□□□□ 0.87
SDCBP-201ENST00000260130 HHIPL2Q6UWX4 724 aa20.48■□□□□ 0.87
SDCBP-201ENST00000260130 ADM5C9JUS6 153 aa20.47■□□□□ 0.87
SDCBP-201ENST00000260130 TBC1D9Q6ZT07 1266 aa20.47■□□□□ 0.87
SDCBP-201ENST00000260130 ZDHHC15Q96MV8 337 aa20.46■□□□□ 0.87
SDCBP-201ENST00000260130 RWDD1Q9H446 243 aaPredicted RBP20.46■□□□□ 0.87
SDCBP-201ENST00000260130 DLK2Q6UY11 383 aa20.46■□□□□ 0.87
SDCBP-201ENST00000260130 GCC1Q96CN9 775 aa20.46■□□□□ 0.87
SDCBP-201ENST00000260130 SCAF8Q9UPN6 1271 aaKnown RBP20.46■□□□□ 0.87
SDCBP-201ENST00000260130 ZAP70P43403 619 aa20.45■□□□□ 0.86
SDCBP-201ENST00000260130 DIXDC1Q155Q3 683 aa20.45■□□□□ 0.86
SDCBP-201ENST00000260130 APOBEC3FQ8IUX4 373 aaKnown RBP20.45■□□□□ 0.86
SDCBP-201ENST00000260130 AOX1Q06278 1338 aa20.45■□□□□ 0.86
SDCBP-201ENST00000260130 CLRN2A0PK11 232 aa20.45■□□□□ 0.86
SDCBP-201ENST00000260130 TMEM88BA6NKF7 163 aa20.45■□□□□ 0.86
SDCBP-201ENST00000260130 CYP2E1P05181 493 aaPredicted RBP20.45■□□□□ 0.86
SDCBP-201ENST00000260130 ANP32AP39687 249 aaKnown RBP20.45■□□□□ 0.86
SDCBP-201ENST00000260130 DZIP1Q86YF9 867 aaKnown RBP20.45■□□□□ 0.86
SDCBP-201ENST00000260130 TDRD3Q9H7E2 651 aaKnown RBP20.45■□□□□ 0.86
SDCBP-201ENST00000260130 CST9Q5W186 159 aa20.44■□□□□ 0.86
SDCBP-201ENST00000260130 APOBEC3HQ6NTF7 200 aaKnown RBP20.44■□□□□ 0.86
SDCBP-201ENST00000260130 CREBZFQ9NS37 354 aa20.44■□□□□ 0.86
SDCBP-201ENST00000260130 LRP2BPQ9P2M1 347 aa20.44■□□□□ 0.86
SDCBP-201ENST00000260130 SPDYE2Q495Y8 402 aa20.44■□□□□ 0.86
SDCBP-201ENST00000260130 ZNF70Q9UC06 446 aaPredicted RBP20.44■□□□□ 0.86
SDCBP-201ENST00000260130 CELF2O95319 508 aaKnown RBP20.43■□□□□ 0.86
SDCBP-201ENST00000260130 HTRA3P83110 453 aa20.43■□□□□ 0.86
SDCBP-201ENST00000260130 MECOMQ03112 1051 aa20.43■□□□□ 0.86
SDCBP-201ENST00000260130 SLF2Q8IX21 1173 aa20.43■□□□□ 0.86
SDCBP-201ENST00000260130 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.43■□□□□ 0.86
SDCBP-201ENST00000260130 VEZTQ9HBM0 779 aa20.43■□□□□ 0.86
SDCBP-201ENST00000260130 RAI14Q9P0K7 980 aa20.43■□□□□ 0.86
SDCBP-201ENST00000260130 CEP350Q5VT06 3117 aa20.43■□□□□ 0.86
SDCBP-201ENST00000260130 ZNF408Q9H9D4 720 aa20.42■□□□□ 0.86
SDCBP-201ENST00000260130 DAGLAQ9Y4D2 1042 aa20.42■□□□□ 0.86
SDCBP-201ENST00000260130 IGHDP01880 384 aa20.42■□□□□ 0.86
SDCBP-201ENST00000260130 ANKRD45Q5TZF3 282 aa20.42■□□□□ 0.86
SDCBP-201ENST00000260130 NSUN4Q96CB9 384 aaKnown RBP20.42■□□□□ 0.86
SDCBP-201ENST00000260130 CDCA5Q96FF9 252 aa20.42■□□□□ 0.86
SDCBP-201ENST00000260130 FAM163AQ96GL9 167 aaPredicted RBP20.42■□□□□ 0.86
SDCBP-201ENST00000260130 NDUFB9Q9Y6M9 179 aa20.42■□□□□ 0.86
SDCBP-201ENST00000260130 ATP5JP18859 108 aa20.41■□□□□ 0.86
SDCBP-201ENST00000260130 DEFB129Q9H1M3 183 aa20.41■□□□□ 0.86
SDCBP-201ENST00000260130 ZBTB47Q9UFB7 747 aaPredicted RBP20.41■□□□□ 0.86
SDCBP-201ENST00000260130 POLR2AP24928 1970 aaKnown RBP20.41■□□□□ 0.86
SDCBP-201ENST00000260130 ZNF384Q8TF68 577 aa20.41■□□□□ 0.86
SDCBP-201ENST00000260130 PIH1D3Q9NQM4 214 aaKnown RBP20.41■□□□□ 0.86
SDCBP-201ENST00000260130 IGSF3O75054 1194 aa20.4■□□□□ 0.86
SDCBP-201ENST00000260130 GSTO1P78417 241 aa20.4■□□□□ 0.86
SDCBP-201ENST00000260130 PRAMEF18Q5VWM3 479 aa20.4■□□□□ 0.86
SDCBP-201ENST00000260130 AKAP11Q9UKA4 1901 aa20.4■□□□□ 0.86
SDCBP-201ENST00000260130 GAKO14976 1311 aa20.4■□□□□ 0.86
SDCBP-201ENST00000260130 LDHCP07864 332 aa20.39■□□□□ 0.86
SDCBP-201ENST00000260130 TNFAIP1Q13829 316 aa20.39■□□□□ 0.86
SDCBP-201ENST00000260130 SMC5Q8IY18 1101 aa20.39■□□□□ 0.86
SDCBP-201ENST00000260130 ANTXR1Q9H6X2 564 aa20.39■□□□□ 0.86
SDCBP-201ENST00000260130 ECHDC1Q9NTX5 307 aa20.39■□□□□ 0.86
SDCBP-201ENST00000260130 BOLA2Q9H3K6 86 aa20.39■□□□□ 0.85
SDCBP-201ENST00000260130 PPP2R3BQ9Y5P8 575 aa20.39■□□□□ 0.85
SDCBP-201ENST00000260130 TTF1Q15361 905 aaPredicted RBP20.38■□□□□ 0.85
SDCBP-201ENST00000260130 CDC42EP5Q6NZY7 148 aa20.38■□□□□ 0.85
SDCBP-201ENST00000260130 DNAJC2Q99543 621 aaKnown RBP20.38■□□□□ 0.85
SDCBP-201ENST00000260130 TMOD2Q9NZR1 351 aa20.38■□□□□ 0.85
SDCBP-201ENST00000260130 MROH7-TTC4A0A0A0MT08 1334 aa20.38■□□□□ 0.85
SDCBP-201ENST00000260130 TCP10L2B9ZVM9 353 aa20.38■□□□□ 0.85
SDCBP-201ENST00000260130 RASA3Q14644 834 aa20.38■□□□□ 0.85
SDCBP-201ENST00000260130 GPATCH3Q96I76 525 aa20.38■□□□□ 0.85
SDCBP-201ENST00000260130 IPO9Q96P70 1041 aaKnown RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms