RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 AADACL3Q5VUY0 350 aa15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 LIN54Q6MZP7 749 aa15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 CENPVQ7Z7K6 275 aaPredicted RBP15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 MFSD4AQ8N468 514 aa15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 CHPT1Q8WUD6 406 aa15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 SMIM4Q8WVI0 70 aa15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 FLYWCH2Q96CP2 140 aaKnown RBP15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 OR51J1Q9H342 316 aa15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 A3GALT2U3KPV4 340 aa15.31■□□□□ 0.04
SHKBP1-221ENST00000599833 CCDC160A6NGH7 325 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 ATP6V0E1O15342 81 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 CD74P04233 296 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 FXYD4P59646 89 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 RPS16P62249 146 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 CX3CL1P78423 397 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 PYHIN1Q6K0P9 492 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 KCTD9Q7L273 389 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 FOXRED2Q8IWF2 684 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 DIRAS2Q96HU8 199 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 HSD17B10Q99714 261 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 TINAGL1Q9GZM7 467 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 SLC5A7Q9GZV3 580 aa15.3■□□□□ 0.04
SHKBP1-221ENST00000599833 PRKDCP78527 4128 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 M0QYG6 137 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 ARPC1BO15143 372 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 TNFSF12O43508 249 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 SLC25A17O43808 307 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 CD3DP04234 171 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 RRASP10301 218 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 PJVKQ0ZLH3 352 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 ZNF66Q6ZN08 573 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 LHFPL1Q86WI0 220 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 NDUFA11Q86Y39 141 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 RNF152Q8N8N0 203 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 ZBTB34Q8NCN2 500 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 OR4D10Q8NGI6 311 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 C15orf40Q8WUR7 153 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 HARBI1Q96MB7 349 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 TSNAXQ99598 290 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 TAS2R8Q9NYW2 309 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 KIAA1456Q9P272 454 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 METTL1Q9UBP6 276 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 V9GYH0 126 aa15.29■□□□□ 0.04
SHKBP1-221ENST00000599833 NOTCH1P46531 2555 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 G3V318 75 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 GSTZ1O43708 216 aaPredicted RBP15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 FCGR3BO75015 233 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 CRYZL1O95825 349 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 CA2P00918 260 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 LGALS7P47929 136 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 RTL8BQ17RB0 113 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 OR2B11Q5JQS5 317 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 TMEM17Q86X19 198 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 MRGPRFQ96AM1 343 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 MMP27Q9H306 513 aa15.28■□□□□ 0.04
SHKBP1-221ENST00000599833 M0QZ24 198 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 RAMP3O60896 148 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 IGHG4P01861 327 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 ZNF735P0CB33 412 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 MRPS10P82664 201 aaKnown RBP15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 IL18Q14116 193 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 C2orf68Q2NKX9 166 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 CCDC190Q86UF4 302 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 PPP1R27Q86WC6 154 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 TMEM229BQ8NBD8 167 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 MINDY2Q8NBR6 621 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 OR6F1Q8NGZ6 308 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 OSR1Q8TAX0 266 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 FCAMRQ8WWV6 532 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 NUBP2Q9Y5Y2 271 aa15.27■□□□□ 0.04
SHKBP1-221ENST00000599833 SHOXO15266 292 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 SOX15O60248 233 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 TBPP20226 339 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 UBE2KP61086 200 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 HERV-K104P61576 105 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 SSBP1Q04837 148 aaKnown RBP15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 KIAA0141Q14154 515 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 ZNF79Q15937 498 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 ACTBL2Q562R1 376 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 TREML4Q6UXN2 200 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 ZNF562Q6V9R5 426 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 C18orf65Q6ZTR6 163 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 MYOZ3Q8TDC0 251 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 TCTEX1D2Q8WW35 142 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 DGCR14Q96DF8 476 aaKnown RBP15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 CLCC1Q96S66 551 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 RSRP1Q9BUV0 290 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 PARP11Q9NR21 331 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 RABL2AQ9UBK7 228 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 RABL2BQ9UNT1 228 aa15.26■□□□□ 0.03
SHKBP1-221ENST00000599833 PGLYRP1O75594 196 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 IGLV1-40P01703 118 aa15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 SAA1P0DJI8 122 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 PSMB8P28062 276 aa15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 UCP3P55916 312 aa15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 NSUN5P1Q3KNT7 163 aa15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 ASPHD1Q5U4P2 390 aa15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 LCNL1Q6ZST4 164 aa15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 TEX45Q8NA69 505 aa15.25■□□□□ 0.03
SHKBP1-221ENST00000599833 OR4X2Q8NGF9 303 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms