RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 EFCAB10A6NFE3 127 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 FOXI3A8MTJ6 420 aaPredicted RBP6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 OR11H12B2RN74 326 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 MYL12BO14950 172 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 BET1O15155 118 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 SHOXO15266 292 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 MED14OSP0DP75 135 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 LGALS7P47929 136 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 TAS2R43P59537 309 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 RHOGP84095 191 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 PLAC9Q5JTB6 97 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 C1orf100Q5SVJ3 147 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 MOB1BQ7L9L4 216 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 CEACAM19Q7Z692 300 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 ADAD2Q8NCV1 583 aaKnown RBP6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 BPIFB6Q8NFQ5 453 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 KCNG3Q8TAE7 436 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 DYNLRB2Q8TF09 96 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 EDARADDQ8WWZ3 215 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 ACOT12Q8WYK0 555 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 LINC00476Q8WZB0 136 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 TMEM203Q969S6 136 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 RNF5Q99942 180 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 SDHAF2Q9NX18 166 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 GHRLQ9UBU3 117 aa6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 ZNF230Q9UIE0 474 aaPredicted RBP6.5□□□□□ -1.37
SHKBP1-220ENST00000599716 TRBV6-6A0A0A6YYG2 114 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 HMX3A6NHT5 357 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 LINC00473A8K010 186 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 H3BUA1 57 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 ITGB1BP1O14713 200 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 MPPED1O15442 326 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 OR2J3O76001 311 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 OR2A4O95047 310 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 OR2C1O95371 312 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 GSTT2P0CG29 244 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 GSTT2BP0CG30 244 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 UBBP0CG47 229 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 SMCPP49901 116 aaPredicted RBP6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 MED21Q13503 144 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 DEFB114Q30KQ6 69 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 MOGAT2Q3SYC2 334 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 HSD17B12Q53GQ0 312 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 OR2B11Q5JQS5 317 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 LCE2CQ5TA81 110 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 GLT8D1Q68CQ7 371 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 RPP25LQ8N5L8 163 aaKnown RBP6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 NANOGP1Q8N7R0 232 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 SRSF12Q8WXF0 261 aaKnown RBP6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 SNAPC3Q92966 411 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 PTX4Q96A99 478 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 CMSS1Q9BQ75 279 aaKnown RBP6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 PECRQ9BY49 303 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 KRTAP4-5Q9BYR2 181 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 C12orf4Q9NQ89 552 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 ZC4H2Q9NQZ6 224 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 PSORS1C1Q9UIG5 152 aa6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 AK6Q9Y3D8 172 aaKnown RBP6.49□□□□□ -1.37
SHKBP1-220ENST00000599716 A0A075B6Q4 140 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 A0A0B4J203 849 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 CXorf65A6NEN9 183 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 C2orf70A6NJV1 201 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 DEDDO75618 318 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 SCAF4O95104 1147 aaKnown RBP6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 CRYZL1O95825 349 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 BPNT1O95861 308 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 OR9G9P0C7N8 305 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 FOLR2P14207 255 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 MYOD1P15172 320 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 SRMP19623 302 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 AADACP22760 399 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 MAPK3P27361 379 aaPredicted RBP6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 PRSS8Q16651 343 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 TATDN3Q17R31 274 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 VKORC1L1Q8N0U8 176 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 OVOL2Q9BRP0 275 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 ST6GALNAC5Q9BVH7 336 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 ZNF430Q9H8G1 570 aaPredicted RBP6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 PLGRKTQ9HBL7 147 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 SLC2A8Q9NY64 477 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 SIGLEC8Q9NYZ4 499 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 PEMTQ9UBM1 199 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 ELF5Q9UKW6 265 aaPredicted RBP6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 KCNK7Q9Y2U2 307 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 DMRT1Q9Y5R6 373 aa6.48□□□□□ -1.37
SHKBP1-220ENST00000599716 IGKV1D-8A0A087WSZ0 117 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 A0A0J9YWU9 116 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 TRDCB7Z8K6 153 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 E7EUB6 86 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 RAB27BO00194 218 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 FABP7O15540 132 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 CD1AP06126 327 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 SAA1P0DJI8 122 aaPredicted RBP6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 RPS25P62851 125 aaKnown RBP6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 ATP5G2Q06055 141 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 C15orf32Q32M92 178 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 TMEM177Q53S58 311 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 HES5Q5TA89 166 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 LIPKQ5VXJ0 399 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 TMEM91Q6ZNR0 172 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms