RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MRPS18CQ9Y3D5 142 aaKnown RBP13.8□□□□□ -0.2
CUX1-213ENST00000549414 TGOLN2O43493 480 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 IGHV3-48P01763 117 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 GFRA1P56159 465 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 PNRC1Q12796 327 aaPredicted RBP13.79□□□□□ -0.2
CUX1-213ENST00000549414 LY6DQ14210 128 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 NRN1LQ496H8 165 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 KHDC3LQ587J8 217 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 TEPPQ6URK8 271 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 H1FOOQ8IZA3 346 aaPredicted RBP13.79□□□□□ -0.2
CUX1-213ENST00000549414 SLC24A4Q8NFF2 622 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 OR13A1Q8NGR1 328 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 NAT8BQ9UHF3 227 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 DANCRP0C864 163 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 CTRB1P17538 263 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 CTRB2Q6GPI1 263 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 FAM216AQ8WUB2 273 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 GTF3C1Q12789 2109 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 SERF2P84101 59 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 WDFY1Q8IWB7 410 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 ZCCHC24Q8N2G6 241 aaKnown RBP13.79□□□□□ -0.2
CUX1-213ENST00000549414 OR2T10Q8NGZ9 312 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 CHODLQ9H9P2 273 aa13.79□□□□□ -0.2
CUX1-213ENST00000549414 XKRY2A2RUG3 117 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 FAM157CP0CG43 387 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 WNT5AP41221 380 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 GPR6P46095 362 aaPredicted RBP13.78□□□□□ -0.2
CUX1-213ENST00000549414 HGFACQ04756 655 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 MIC13Q5XKP0 118 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 ZNF714Q96N38 554 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 TMEM140Q9NV12 185 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 IGHV2OR16-5A0A0B4J2B6 119 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 AP4M1O00189 453 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 UCP1P25874 307 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 FOXF2Q12947 444 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 OR8B3Q8NGG8 313 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 OR8B2Q96RD0 313 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 SEBOXQ9HB31 216 aaPredicted RBP13.78□□□□□ -0.2
CUX1-213ENST00000549414 MANBALQ9NQG1 85 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 RPRMQ9NS64 109 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 ABCA2Q9BZC7 2435 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 S100A7P31151 101 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 SUPT4H1P63272 117 aaKnown RBP13.78□□□□□ -0.2
CUX1-213ENST00000549414 ACSF3Q4G176 576 aaPredicted RBP13.78□□□□□ -0.2
CUX1-213ENST00000549414 ACP7Q6ZNF0 438 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 OR2T6Q8NHC8 308 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 KIAA1324LA8MWY0 1029 aaPredicted RBP13.78□□□□□ -0.2
CUX1-213ENST00000549414 CLN5O75503 358 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 OR1L8Q8NGR8 309 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 TMPRSS5Q9H3S3 457 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 BARX1Q9HBU1 254 aaPredicted RBP13.78□□□□□ -0.2
CUX1-213ENST00000549414 KCNMB2Q9Y691 235 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 PXMP4Q9Y6I8 212 aa13.78□□□□□ -0.2
CUX1-213ENST00000549414 IGKV3-7A0A075B6H7 116 aa13.77□□□□□ -0.2
CUX1-213ENST00000549414 SERTM2A0A1B0GWG4 89 aa13.77□□□□□ -0.2
CUX1-213ENST00000549414 C17orf98A8MV24 154 aa13.77□□□□□ -0.2
CUX1-213ENST00000549414 PLAUP00749 431 aa13.77□□□□□ -0.2
CUX1-213ENST00000549414 KRTDAPP60985 99 aa13.77□□□□□ -0.2
CUX1-213ENST00000549414 B3GALT5-AS1P59052 145 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 HCP5Q6MZN7 132 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 GP6Q9HCN6 339 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 C2orf16Q68DN1 1984 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 TRAV24A0A0B4J272 114 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 FCN1O00602 326 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 LILRA1O75019 489 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 HOXD4P09016 255 aaPredicted RBP13.77□□□□□ -0.21
CUX1-213ENST00000549414 PMCHP20382 165 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 CAMPP49913 170 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 HIST1H3AP68431 136 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 FAM216BQ8N7L0 139 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 OR4X1Q8NH49 305 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 RAB24Q969Q5 203 aa13.77□□□□□ -0.21
CUX1-213ENST00000549414 BIVMQ86UB2 503 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 SIGLECL1Q8N7X8 197 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 TECRQ9NZ01 308 aaKnown RBP13.76□□□□□ -0.21
CUX1-213ENST00000549414 PLCE1Q9P212 2302 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 MMP7P09237 267 aaPredicted RBP13.76□□□□□ -0.21
CUX1-213ENST00000549414 SPCS3P61009 180 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 PAX5Q02548 391 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 MMDQ15546 238 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 TXN2Q99757 166 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 CHD8Q9HCK8 2581 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 A8MXK9 166 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 OR10J1P30954 320 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 GLRXP35754 106 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 MEGF10Q96KG7 1140 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 TMUB1Q9BVT8 246 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 PRO1933Q9H354 126 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 DBX1A6NMT0 343 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 EGR1P18146 543 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 MEF2BQ02080 365 aaPredicted RBP13.76□□□□□ -0.21
CUX1-213ENST00000549414 ARL16Q0P5N6 197 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 OR10G8Q8NGN5 311 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 OR1L4Q8NGR5 311 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 NPVFQ9HCQ7 196 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 HILPDAQ9Y5L2 63 aa13.76□□□□□ -0.21
CUX1-213ENST00000549414 SRSF10O75494 262 aaKnown RBP13.75□□□□□ -0.21
CUX1-213ENST00000549414 MEOX2P50222 304 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 SUMO1P63165 101 aaKnown RBP13.75□□□□□ -0.21
CUX1-213ENST00000549414 SRSF3P84103 164 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms