RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZNF645Q8N7E2 425 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 TCTEX1D1Q8N7M0 179 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 BEST4Q8NFU0 473 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 MRAPQ8TCY5 172 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 CASTOR1Q8WTX7 329 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 ARPC1AQ92747 370 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 ADTRPQ96IZ2 230 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 MCRIP2Q9BUT9 160 aaKnown RBP11.5□□□□□ -0.57
USP28-204ENST00000537642 FUNDC2Q9BWH2 189 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 GPR61Q9BZJ8 451 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 VSIG4Q9Y279 399 aa11.5□□□□□ -0.57
USP28-204ENST00000537642 SHOXO15266 292 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 TUSC2O75896 110 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 IGLV2-14P01704 120 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 SMIM18P0DKX4 95 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 RRASP10301 218 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 NCS1P62166 190 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 GNB1P62873 340 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 RUNX1Q01196 453 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 CBX3Q13185 183 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 FXYD3Q14802 87 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 ACTBL2Q562R1 376 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 ASPHD1Q5U4P2 390 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 HOGA1Q86XE5 327 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 LFNGQ8NES3 379 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 OR11H1Q8NG94 326 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 GRPEL2Q8TAA5 225 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 OR5B12Q96R08 314 aa11.49□□□□□ -0.57
USP28-204ENST00000537642 RBMX2Q9Y388 322 aaKnown RBP11.49□□□□□ -0.57
USP28-204ENST00000537642 XRCC3O43542 346 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 CRYZL1O95825 349 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 FCER2P06734 321 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 ARPC4P59998 168 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 RPL30P62888 115 aaKnown RBP11.48□□□□□ -0.57
USP28-204ENST00000537642 MRGPRG-AS1Q2M3A8 158 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 UBE2NLQ5JXB2 153 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 SAMD12Q8N8I0 201 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 OR5M8Q8NGP6 311 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 OR13F1Q8NGS4 319 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 SLC25A46Q96AG3 418 aa11.48□□□□□ -0.57
USP28-204ENST00000537642 S100A16Q96FQ6 103 aaKnown RBP11.48□□□□□ -0.57
USP28-204ENST00000537642 K7EIL1 84 aa11.47□□□□□ -0.57
USP28-204ENST00000537642 SLC22A5O76082 557 aa11.47□□□□□ -0.57
USP28-204ENST00000537642 CNIH1O95406 144 aa11.47□□□□□ -0.57
USP28-204ENST00000537642 VBP1P61758 197 aa11.47□□□□□ -0.57
USP28-204ENST00000537642 EIF4EBP1Q13541 118 aaPredicted RBP11.47□□□□□ -0.57
USP28-204ENST00000537642 OR1N2Q8NGR9 330 aa11.47□□□□□ -0.57
USP28-204ENST00000537642 DPF1Q92782 380 aa11.47□□□□□ -0.57
USP28-204ENST00000537642 SNAPC3Q92966 411 aa11.47□□□□□ -0.57
USP28-204ENST00000537642 ALX4Q9H161 411 aaPredicted RBP11.47□□□□□ -0.57
USP28-204ENST00000537642 DNAH9Q9NYC9 4486 aa11.47□□□□□ -0.57
USP28-204ENST00000537642 WI2-2373I1.2A0A1W2PRP0 233 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 MEIS3P1A6NDR6 274 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 FCGR3BO75015 233 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 AADACP22760 399 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 FCGR2CP31995 323 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 CBX5P45973 191 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 UBE2KP61086 200 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 ZNF616Q08AN1 781 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 OR2B11Q5JQS5 317 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 PYHIN1Q6K0P9 492 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 IDO2Q6ZQW0 420 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 KCTD9Q7L273 389 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 OVCH2Q7RTZ1 564 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 TEX45Q8NA69 505 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 OSR1Q8TAX0 266 aaPredicted RBP11.46□□□□□ -0.57
USP28-204ENST00000537642 KCTD12Q96CX2 325 aaKnown RBP11.46□□□□□ -0.57
USP28-204ENST00000537642 MS4A10Q96PG2 267 aa11.46□□□□□ -0.57
USP28-204ENST00000537642 EIF4EP06730 217 aaKnown RBP11.45□□□□□ -0.58
USP28-204ENST00000537642 OR8U8P0C7N1 319 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 TPPP2P59282 170 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 TAS2R20P59543 309 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 PRSS8Q16651 343 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 VMA21Q3ZAQ7 101 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 TMEM69Q5SWH9 247 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 GPHA2Q96T91 129 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 HSD17B10Q99714 261 aaKnown RBP11.45□□□□□ -0.58
USP28-204ENST00000537642 NAA50Q9GZZ1 169 aaKnown RBP11.45□□□□□ -0.58
USP28-204ENST00000537642 ANAPC10Q9UM13 185 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 PRELID3BQ9Y3B1 194 aa11.45□□□□□ -0.58
USP28-204ENST00000537642 SEC14L6B5MCN3 397 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 PPYP01298 95 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 IGHV3-11P01762 117 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 TRGV3P03979 118 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 LGALS1P09382 135 aaKnown RBP11.44□□□□□ -0.58
USP28-204ENST00000537642 SAA1P0DJI8 122 aaPredicted RBP11.44□□□□□ -0.58
USP28-204ENST00000537642 BRWD1-AS2P59051 145 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 C9orf66Q5T8R8 295 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 MFSD4AQ8N468 514 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 POC5Q8NA72 575 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 OR5T1Q8NG75 326 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 OR5AP2Q8NGF4 316 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 SECTM1Q8WVN6 248 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 TCTEX1D2Q8WW35 142 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 RHOVQ96L33 236 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 DCUN1D5Q9BTE7 237 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 SLA2Q9H6Q3 261 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 CCL28Q9NRJ3 127 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 TAS2R8Q9NYW2 309 aa11.44□□□□□ -0.58
USP28-204ENST00000537642 COMMD3Q9UBI1 195 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 296.6 ms