RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ZNF878C9JN71 531 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 RAMP3O60896 148 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 GTF2F2P13984 249 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 SUMO1P63165 101 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 MFGE8Q08431 387 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 EDDM3AQ14507 147 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 MRPL23Q16540 153 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 CR1LQ2VPA4 569 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 TDRG1Q3Y452 100 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 BRD3OSQ6XYD6 125 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 Q6ZR03 302 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 Q6ZRG5 221 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 SLC35F2Q8IXU6 374 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 TMEM163Q8TC26 289 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 TSEN15Q8WW01 171 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 APOBEC3DQ96AK3 386 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 GPER1Q99527 375 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 PRRT1Q99946 306 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 PDCD1LG2Q9BQ51 273 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 MMP26Q9NRE1 261 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 HSPB7Q9UBY9 170 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 PIGLQ9Y2B2 252 aa6.62□□□□□ -1.35
LIMCH1-219ENST00000514096 ADAM20O43506 726 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 GCGP01275 180 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 EIF4EP06730 217 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 OR10J1P30954 320 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 TMEM183BQ1AE95 376 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 C10orf128Q5T292 105 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 DUX4L9Q6RFH8 374 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 FOXC2Q99958 501 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 MBNL3Q9NUK0 354 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 PITPNC1Q9UKF7 332 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 KIAA1324LA8MWY0 1029 aaPredicted RBP6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 PRR32B1ATL7 298 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 FAM157AC9JC47 383 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 K7EP13 123 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 ARPC3O15145 178 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 ANGPTL7O43827 346 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 SNRPBP14678 240 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 NPY1RP25929 384 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 GNRHRP30968 328 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 CFHR2P36980 270 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 SNCAP37840 140 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 PAFAH1B2P68402 229 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 KCNIP4Q6PIL6 250 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 C12orf54Q6X4T0 127 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 OR4A4PQ8NGN8 299 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 CLDND2Q8NHS1 167 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 CCL13Q99616 98 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 MIEN1Q9BRT3 115 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 C7orf69Q9H7B7 122 aa6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 LSM5Q9Y4Y9 91 aaKnown RBP6.61□□□□□ -1.35
LIMCH1-219ENST00000514096 ST8SIA3O43173 380 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 PRAF2O60831 178 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 IGLV1-44P01699 117 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 CPEP16870 476 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 CHATP28329 748 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 MMP16P51512 607 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 ARF6P62330 175 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 PAX2Q02962 417 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 ZNF880Q6PDB4 577 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR13C8Q8NGS7 320 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 BEX4Q9NWD9 120 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 GAGE10A6NGK3 116 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 RHBDL1O75783 438 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 PGAM2P15259 253 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 MPV17LQ2QL34 196 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 KCTD18Q6PI47 426 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR8B12Q8NGG6 310 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR13G1Q8NGZ3 307 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR10AC1Q8NH08 325 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 LRRC29Q8WV35 223 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 RAB1CQ92928 201 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 CHST6Q9GZX3 395 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR10A2Q9H208 303 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 SLC2A8Q9NY64 477 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 FOXJ3Q9UPW0 622 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 LAMTOR2Q9Y2Q5 125 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 NAP1L6A6NFF2 107 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 MMP9P14780 707 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 MAS1LP35410 378 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 CRYBB2P43320 205 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 MTNR1AP48039 350 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 MMP15P51511 669 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 HMGA2P52926 109 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 EDDM3BP56851 147 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR2F1Q13607 317 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 HIST3H3Q16695 136 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 LYPD2Q6UXB3 125 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 GDPGP1Q6ZNW5 385 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 MEPCEQ7L2J0 689 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 ACBD7Q8N6N7 88 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR2AK2Q8NG84 335 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR52I1Q8NGK6 324 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 OR52I2Q8NH67 350 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 ORAOV1Q8WV07 137 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 RBMXL1Q96E39 390 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 C4orf36Q96KX1 117 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 SIGLEC11Q96RL6 698 aa6.6□□□□□ -1.35
LIMCH1-219ENST00000514096 MAGT1Q9H0U3 335 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms