RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 OPTCQ9UBM4 332 aa2.81□□□□□ -1.96
VPS13D-207ENST00000476169 PCYT1BQ9Y5K3 369 aaPredicted RBP2.81□□□□□ -1.96
VPS13D-207ENST00000476169 COL4A1P02462 1669 aa2.81□□□□□ -1.96
VPS13D-207ENST00000476169 COL4A5P29400 1685 aa2.81□□□□□ -1.96
VPS13D-207ENST00000476169 ADAMTS7Q9UKP4 1686 aa2.81□□□□□ -1.96
VPS13D-207ENST00000476169 AGRNO00468 2067 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 MIA3Q5JRA6 1907 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 C5P01031 1676 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 RIC1Q4ADV7 1423 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 IBTKQ9P2D0 1353 aaPredicted RBP2.8□□□□□ -1.96
VPS13D-207ENST00000476169 A0A096LNJ9 63 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 IGHV1-3A0A0C4DH29 117 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 A0A1B0GV50 99 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 VGLL3A8MV65 326 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 ZNF878C9JN71 531 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 DEDDO75618 318 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 POP7O75817 140 aaKnown RBP2.8□□□□□ -1.96
VPS13D-207ENST00000476169 CIAO1O76071 339 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 HAND1O96004 215 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 OR5G3P0C626 314 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 PPP1CCP36873 323 aaKnown RBP2.8□□□□□ -1.96
VPS13D-207ENST00000476169 HSPA9P38646 679 aaKnown RBP2.8□□□□□ -1.96
VPS13D-207ENST00000476169 OR1E2P47887 323 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 PSME3P61289 254 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 POU6F1Q14863 301 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 MORN3Q6PF18 240 aaPredicted RBP2.8□□□□□ -1.96
VPS13D-207ENST00000476169 WDR86Q86TI4 376 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 SLC35F6Q8N357 371 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 OR8S1Q8NH09 359 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 MCFD2Q8NI22 146 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 YIPF5Q969M3 257 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 SLC25A46Q96AG3 418 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 SLC25A44Q96H78 314 aaPredicted RBP2.8□□□□□ -1.96
VPS13D-207ENST00000476169 OR52E6Q96RD3 313 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 TRIB3Q96RU7 358 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 NIPSNAP1Q9BPW8 284 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 MED28Q9H204 178 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 LHX9Q9NQ69 397 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 ZNF331Q9NQX6 463 aaPredicted RBP2.8□□□□□ -1.96
VPS13D-207ENST00000476169 TMEM38BQ9NVV0 291 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 TAS2R1Q9NYW7 299 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 NYAP2Q9P242 653 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 WASHC3Q9Y3C0 194 aa2.8□□□□□ -1.96
VPS13D-207ENST00000476169 KIF20BQ96Q89 1820 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 TJP1Q07157 1748 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 RTL9Q8NET4 1388 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 OR5K4A6NMS3 321 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 C4orf51C9J302 202 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 H3BSA7 217 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 K7ERS5 55 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 OR7C1O76099 320 aaPredicted RBP2.79□□□□□ -1.96
VPS13D-207ENST00000476169 NRASP01111 189 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 HRASP01112 189 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 KRASP01116 189 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 BTN3A2P78410 334 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 ELF3P78545 371 aaPredicted RBP2.79□□□□□ -1.96
VPS13D-207ENST00000476169 PSG4Q00888 419 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 RNF212Q495C1 297 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 FAM201AQ5SY85 155 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 C1orf194Q5T5A4 169 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 TMEM42Q69YG0 159 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 FAM71E1Q6IPT2 247 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 CYHR1Q6ZMK1 362 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 TIFABQ6ZNK6 161 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 ZNF550Q7Z398 422 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 LYG2Q86SG7 212 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 OR8A1Q8NGG7 326 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 OR2T4Q8NH00 348 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 OR4A5Q8NH83 315 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 RBPMSQ93062 196 aaKnown RBP2.79□□□□□ -1.96
VPS13D-207ENST00000476169 SFRP2Q96HF1 295 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 PDFQ9HBH1 243 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 TP53TG3Q9ULZ0 132 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 FIS1Q9Y3D6 152 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 PXMP4Q9Y6I8 212 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 BTAF1O14981 1849 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 MAP2P11137 1827 aaKnown RBP2.79□□□□□ -1.96
VPS13D-207ENST00000476169 LTN1O94822 1766 aa2.79□□□□□ -1.96
VPS13D-207ENST00000476169 COL2A1P02458 1487 aaPredicted RBP2.78□□□□□ -1.96
VPS13D-207ENST00000476169 WNK3Q9BYP7 1800 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 TMED7-TICAM2A0A0A6YYA0 188 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 GNG14A0A1W2PPG7 69 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 PQLC2LA1A4F0 135 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 BHLHE40O14503 412 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 KLRC4O43908 158 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 HLA-DQB2P05538 268 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 ZNF19P17023 458 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 GZMMP51124 257 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 TMEM33P57088 247 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 ARPC4P59998 168 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 HIST1H3AP68431 136 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 H3F3AP84243 136 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 NDPQ00604 133 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 FABP9Q0Z7S8 132 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 ZNF678Q5SXM1 525 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 NANOGP8Q6NSW7 305 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 SBSNQ6UWP8 590 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 SLC36A1Q7Z2H8 476 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 GLT6D1Q7Z4J2 308 aa2.78□□□□□ -1.96
VPS13D-207ENST00000476169 TAC4Q86UU9 113 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms