RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 KCTD14Q9BQ13 255 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 OSBPL10Q9BXB5 764 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 FGF20Q9NP95 211 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 C19orf12Q9NSK7 152 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 DDX18Q9NVP1 670 aaKnown RBP2.33□□□□□ -2.04
VPS13A-210ENST00000471439 TMEM38BQ9NVV0 291 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 MINOS1-NBL1R4GNA1 71 aa2.33□□□□□ -2.04
VPS13A-210ENST00000471439 CLDN24A6NM45 220 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 AP3B1O00203 1094 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 FGF16O43320 207 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 FARS2O95363 451 aaKnown RBP2.32□□□□□ -2.04
VPS13A-210ENST00000471439 C6orf47O95873 294 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 IGLV2-8P01709 118 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 IGHV3-11P01762 117 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 TLX1NBP0CAT3 122 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 MUC1P15941 1255 aaPredicted RBP2.32□□□□□ -2.04
VPS13A-210ENST00000471439 IFNA8P32881 189 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 HRH1P35367 487 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 SERPINB5P36952 375 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 PPP1R2P41236 205 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 CAV3P56539 151 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 LINC00315P59091 139 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 NUTF2P61970 127 aaKnown RBP2.32□□□□□ -2.04
VPS13A-210ENST00000471439 C1DQ13901 141 aaKnown RBP2.32□□□□□ -2.04
VPS13A-210ENST00000471439 MRPL23Q16540 153 aaKnown RBP2.32□□□□□ -2.04
VPS13A-210ENST00000471439 ZSCAN26Q16670 478 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 VPS26BQ4G0F5 336 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 COA6Q5JTJ3 125 aaKnown RBP2.32□□□□□ -2.04
VPS13A-210ENST00000471439 NANOGNBQ7Z5D8 188 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 CLDN22Q8N7P3 220 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 Q8N976 141 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 OR6N1Q8NGY5 312 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 OR5B3Q8NH48 314 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 CD300LFQ8TDQ1 290 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 TPD52L3Q96J77 140 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 ATP5SQ99766 215 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 SLC29A1Q99808 456 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 TAPBPLQ9BX59 468 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 DPH3P1Q9H4G8 78 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 TAS2R13Q9NYV9 303 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 ZNF391Q9UJN7 358 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 ING4Q9UNL4 249 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 NDUFAF1Q9Y375 327 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 N6AMT1Q9Y5N5 214 aa2.32□□□□□ -2.04
VPS13A-210ENST00000471439 XKRYO14609 159 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 RAB29O14966 203 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 RNF13O43567 381 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 STK16O75716 305 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 GNAO1P09471 354 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 CCDC172P0C7W6 258 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 MAS1LP35410 378 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 AQP2P41181 271 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 SLC1A2P43004 574 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 IDH2P48735 452 aaKnown RBP2.31□□□□□ -2.04
VPS13A-210ENST00000471439 UBE2AP49459 152 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 UGT2B15P54855 530 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 SYNJ2BPP57105 145 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 BNIP2Q12982 314 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 TTC32Q5I0X7 151 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 ZNF660Q6AZW8 331 aaPredicted RBP2.31□□□□□ -2.04
VPS13A-210ENST00000471439 ANKRD26P1Q6NSI1 321 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 ZNF493Q6ZR52 646 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 PAGE2Q7Z2X7 111 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 DPPA2Q7Z7J5 298 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 CNPY4Q8N129 248 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 PDIK1LQ8N165 341 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 MREGQ8N565 214 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 COX18Q8N8Q8 333 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 ZFP41Q8N8Y5 198 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 CDRT4Q8N9R6 151 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 SPATA4Q8NEY3 305 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 OR10R2Q8NGX6 335 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 RASD2Q96D21 266 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 TSSK3Q96PN8 268 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 GAFA1Q96PS6 74 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 ABCG5Q9H222 651 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 OR51M1Q9H341 326 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 TMEM100Q9NV29 134 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 NMRK1Q9NWW6 199 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 USE1Q9NZ43 259 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 PSG11Q9UQ72 335 aa2.31□□□□□ -2.04
VPS13A-210ENST00000471439 IGLV4-69A0A075B6H9 119 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 IGLV11-55A0A075B6I3 123 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 EIF3HO15372 352 aaKnown RBP eCLIP2.3□□□□□ -2.04
VPS13A-210ENST00000471439 ENTPD5O75356 428 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 CIB2O75838 187 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 CSTAP01040 98 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 IL3P08700 152 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 PGA4P0DJD7 388 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 PGA3P0DJD8 388 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 PRPS2P11908 318 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 PGAM1P18669 254 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 TUBG1P23258 451 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 HTR1DP28221 377 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 POLR2HP52434 150 aaKnown RBP2.3□□□□□ -2.04
VPS13A-210ENST00000471439 DLX6P56179 175 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 ATP5IP56385 69 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-210ENST00000471439 EIF3EP60228 445 aaKnown RBP2.3□□□□□ -2.04
VPS13A-210ENST00000471439 ESRRGP62508 458 aa2.3□□□□□ -2.04
VPS13A-210ENST00000471439 PSG4Q00888 419 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms