RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 A0A0B4J203 849 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 BRI3O95415 125 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 ZP3P21754 424 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 TALDO1P37837 337 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 ARL6IP1Q15041 203 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 SBSPONQ8IVN8 264 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 H1FOOQ8IZA3 346 aaPredicted RBP12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 ADTRPQ96IZ2 230 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 RAB26Q9ULW5 256 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 STUB1Q9UNE7 303 aa12.72□□□□□ -0.37
CCDC28B-204ENST00000469003 SRRM4A7MD48 611 aaKnown RBP12.71□□□□□ -0.37
CCDC28B-204ENST00000469003 FRMD6-AS1P0C7T7 363 aa12.71□□□□□ -0.37
CCDC28B-204ENST00000469003 GABARAPL2P60520 117 aa12.71□□□□□ -0.37
CCDC28B-204ENST00000469003 C22orf42Q6IC83 251 aa12.71□□□□□ -0.37
CCDC28B-204ENST00000469003 NR2C2APQ86WQ0 139 aa12.71□□□□□ -0.37
CCDC28B-204ENST00000469003 DDB2Q92466 427 aa12.71□□□□□ -0.37
CCDC28B-204ENST00000469003 HUWE1Q7Z6Z7 4374 aaKnown RBP12.71□□□□□ -0.38
CCDC28B-204ENST00000469003 IGKV1D-8A0A087WSZ0 117 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 TRIM64CA6NLI5 447 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 C3orf84H3BNL1 204 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 MRPS14O60783 128 aaKnown RBP12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 IGLV1-51P01701 117 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 DTYMKP23919 212 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 DUTP33316 252 aaKnown RBP12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 MRGPRG-AS1Q2M3A8 158 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 VMA21Q3ZAQ7 101 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 OVCH2Q7RTZ1 564 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 TEX45Q8NA69 505 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 TINAGL1Q9GZM7 467 aaPredicted RBP12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 ATG5Q9H1Y0 275 aa12.7□□□□□ -0.38
CCDC28B-204ENST00000469003 ANKRD34BA5PLL1 514 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 CRYZL1O95825 349 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 AADACP22760 399 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 UBE2KP61086 200 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 KLF5Q13887 457 aaPredicted RBP12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 UBE2UQ5VVX9 321 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 HAPLN4Q86UW8 402 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 ANKRD13BQ86YJ7 626 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 OSR1Q8TAX0 266 aaPredicted RBP12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 RCHY1Q96PM5 261 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 RSRP1Q9BUV0 290 aa12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 ELF5Q9UKW6 265 aaPredicted RBP12.69□□□□□ -0.38
CCDC28B-204ENST00000469003 SMIM30A4D0T7 59 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 MSGN1A6NI15 193 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 LINC00473A8K010 186 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 NOTOA8MTQ0 251 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 FGF9P31371 208 aaPredicted RBP12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 PRSS8Q16651 343 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 CDNFQ49AH0 187 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 ZNF343Q6P1L6 599 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 USMG5Q96IX5 58 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 PHB2Q99623 299 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 COA4Q9NYJ1 87 aa12.68□□□□□ -0.38
CCDC28B-204ENST00000469003 STAB2Q8WWQ8 2551 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 CTXN2P0C2S0 81 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 DEFA5Q01523 94 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 DYRK1AQ13627 763 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 TNXAQ16473 311 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 HACD4Q5VWC8 232 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 Q8N1Y9 231 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 ZNF645Q8N7E2 425 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 ADAD2Q8NCV1 583 aaKnown RBP12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 OR9G4Q8NGQ1 327 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 SRSF12Q8WXF0 261 aaKnown RBP12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 DCSTAMPQ9H295 470 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 ZMAT4Q9H898 229 aa12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 TXNL4BQ9NX01 149 aaKnown RBP12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 PEF1Q9UBV8 284 aaKnown RBP12.67□□□□□ -0.38
CCDC28B-204ENST00000469003 OR9G9P0C7N8 305 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 APELAP0DMC3 54 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 PSMB9P28065 219 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 SYNJ2BPP57105 145 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 IDO2Q6ZQW0 420 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 TPRA1Q86W33 373 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 SPARTQ8N0X7 666 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 ST6GALNAC5Q9BVH7 336 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 OR2W1Q9Y3N9 320 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 TENM2Q9NT68 2774 aa12.66□□□□□ -0.38
CCDC28B-204ENST00000469003 TNCP24821 2201 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 BIRC6Q9NR09 4857 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 A8MZ25 164 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 MPPED1O15442 326 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 CREBL2O60519 120 aaPredicted RBP12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 RBMXL2O75526 392 aaKnown RBP12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 SCGNO76038 276 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 SLC22A5O76082 557 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 HLA-DQB1P01920 261 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 SAA1P0DJI8 122 aaPredicted RBP12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 IGHV4-30-4P0DP06 118 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 NFYAP23511 347 aaPredicted RBP12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 CDK10Q15131 360 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 IL34Q6ZMJ4 242 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 MUC7Q8TAX7 377 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 NUDCD2Q8WVJ2 157 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 ACOT12Q8WYK0 555 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 FCGR1BQ92637 280 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 ZNF430Q9H8G1 570 aaPredicted RBP12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 RBMX2Q9Y388 322 aaKnown RBP12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 PRELID3BQ9Y3B1 194 aa12.65□□□□□ -0.38
CCDC28B-204ENST00000469003 EPPK1P58107 5090 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms