RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MFAP4P55083 255 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 SERGEFQ9UGK8 458 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 UFC1Q9Y3C8 167 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 RTP5Q14D33 572 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 BOD1L2Q8IYS8 172 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 OR4D11Q8NGI4 311 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 RAMP3O60896 148 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 CKS2P33552 79 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 VMA21Q3ZAQ7 101 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 CCL28Q9NRJ3 127 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 H0Y980 276 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 FCGR3BO75015 233 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 LIMS1P48059 325 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 KRTCAP3Q53RY4 240 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 PXMP4Q9Y6I8 212 aa11.48□□□□□ -0.57
USP40-208ENST00000450966 CSRP2Q16527 193 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 MRPS18BQ9Y676 258 aaKnown RBP11.47□□□□□ -0.57
USP40-208ENST00000450966 QSER1Q2KHR3 1735 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 FAM90A26D6RGX4 464 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 PEX11BO96011 259 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 ZNF683Q8IZ20 524 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 AICDAQ9GZX7 198 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 KLHDC2Q9Y2U9 406 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 GAGE5Q13069 117 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 GAGE6Q13070 117 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 FXYD3Q14802 87 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 TEX38Q6PEX7 206 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 MRGPRFQ96AM1 343 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 RCC1LQ96I51 464 aaKnown RBP11.47□□□□□ -0.57
USP40-208ENST00000450966 SARGQ9BW04 601 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 PLPP3O14495 311 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 SPRY3O43610 288 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 RPS20P60866 119 aaKnown RBP11.47□□□□□ -0.57
USP40-208ENST00000450966 C10orf113Q5VZT2 155 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 MOB3BQ86TA1 216 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 FADS6Q8N9I5 356 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 MGST2Q99735 147 aa11.47□□□□□ -0.57
USP40-208ENST00000450966 POLR3KQ9Y2Y1 108 aaPredicted RBP11.47□□□□□ -0.57
USP40-208ENST00000450966 IGHV5-51A0A0C4DH38 117 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 CD300EQ496F6 205 aaPredicted RBP11.46□□□□□ -0.57
USP40-208ENST00000450966 TM4SF20Q53R12 229 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 MPV17L2Q567V2 206 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 WIPI1Q5MNZ9 446 aaPredicted RBP11.46□□□□□ -0.57
USP40-208ENST00000450966 NPVFQ9HCQ7 196 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 TAF1LQ8IZX4 1826 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 LGALS3P17931 250 aaKnown RBP11.46□□□□□ -0.57
USP40-208ENST00000450966 YBX1P67809 324 aaKnown RBP11.46□□□□□ -0.57
USP40-208ENST00000450966 POU2AF1Q16633 256 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 C1QL3Q5VWW1 255 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 OR10AC1Q8NH08 325 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 ODAMA1E959 279 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 TMEM189A5PLL7 270 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 NKX2-2O95096 273 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 MYF5P13349 255 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 ALKBH3Q96Q83 286 aaPredicted RBP11.46□□□□□ -0.57
USP40-208ENST00000450966 RPRMQ9NS64 109 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 DNAJB12Q9NXW2 375 aaKnown RBP11.46□□□□□ -0.57
USP40-208ENST00000450966 PLA2G3Q9NZ20 509 aa11.46□□□□□ -0.57
USP40-208ENST00000450966 CD3EP07766 207 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 CA7P43166 264 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 NANOS3P60323 173 aaKnown RBP11.46□□□□□ -0.58
USP40-208ENST00000450966 TCF24Q7RTU0 167 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 GNB1LQ9BYB4 327 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 EVPLQ92817 2033 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 AZU1P20160 251 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 TMEM95Q3KNT9 176 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 SPINK9Q5DT21 86 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 C1orf100Q5SVJ3 147 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 DNM1P46Q6ZS02 220 aa11.46□□□□□ -0.58
USP40-208ENST00000450966 FLYWCH2Q96CP2 140 aaKnown RBP11.46□□□□□ -0.58
USP40-208ENST00000450966 SPAARA0A1B0GVQ0 90 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 AGFG2O95081 481 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 ACTL10Q5JWF8 245 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 ADAMTSL5Q6ZMM2 481 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 SNRNP40Q96DI7 357 aaKnown RBP11.45□□□□□ -0.58
USP40-208ENST00000450966 RTN4RQ9BZR6 473 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 DLL1O00548 723 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 PRKNO60260 465 aaPredicted RBP11.45□□□□□ -0.58
USP40-208ENST00000450966 GOSR1O95249 250 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 PLXNB2O15031 1838 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 TRBV5-7A0A0A0MS05 114 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 TRAV8-6A0A0B4J262 113 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 CA11O75493 328 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 GNG3P63215 75 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 SLC23A3Q6PIS1 610 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 J3QR06 171 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 ZFP36L2P47974 494 aaKnown RBP11.45□□□□□ -0.58
USP40-208ENST00000450966 BHLHA9Q7RTU4 235 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 OR2Z1Q8NG97 314 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 ONECUT1Q9UBC0 465 aa11.45□□□□□ -0.58
USP40-208ENST00000450966 TSSC4Q9Y5U2 329 aaPredicted RBP11.45□□□□□ -0.58
USP40-208ENST00000450966 B4GALNT1Q00973 533 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 ANKRD39Q53RE8 183 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 C9orf153Q5TBE3 101 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 OR52M1Q8NGK5 317 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 PGLYRP4Q96LB8 373 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 MESP1Q9BRJ9 268 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 PAXXQ9BUH6 204 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 YAE1D1Q9NRH1 226 aa11.44□□□□□ -0.58
USP40-208ENST00000450966 ALKBH6Q3KRA9 238 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms