RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 CNIH1O95406 144 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 IGLV2-23P01705 113 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 HLA-DQB1P01920 261 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 EGR2P11161 476 aaPredicted RBP13.09□□□□□ -0.31
HMGN4-201ENST00000377575 HOXD3P31249 432 aaPredicted RBP13.09□□□□□ -0.31
HMGN4-201ENST00000377575 TGFBR1P36897 503 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 LSM3P62310 102 aaKnown RBP13.09□□□□□ -0.31
HMGN4-201ENST00000377575 GNB1P62873 340 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 KIAA0141Q14154 515 aaPredicted RBP13.09□□□□□ -0.31
HMGN4-201ENST00000377575 FXYD3Q14802 87 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 VMA21Q3ZAQ7 101 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 LFNGQ8NES3 379 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 BEST4Q8NFU0 473 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 GRPEL2Q8TAA5 225 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 DDB2Q92466 427 aa13.09□□□□□ -0.31
HMGN4-201ENST00000377575 MRPS7Q9Y2R9 242 aaKnown RBP13.09□□□□□ -0.31
HMGN4-201ENST00000377575 TRIM64CA6NLI5 447 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 LINC00473A8K010 186 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 I3L521 148 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 J3QRK9 145 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 SOX15O60248 233 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 CRYZL1O95825 349 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 CBX5P45973 191 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 ZNF616Q08AN1 781 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 KCTD9Q7L273 389 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 OSR1Q8TAX0 266 aaPredicted RBP13.08□□□□□ -0.32
HMGN4-201ENST00000377575 S100A16Q96FQ6 103 aaKnown RBP13.08□□□□□ -0.32
HMGN4-201ENST00000377575 SLA2Q9H6Q3 261 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 AUNIPQ9H7T9 357 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 RBMX2Q9Y388 322 aaKnown RBP13.08□□□□□ -0.32
HMGN4-201ENST00000377575 PRELID3BQ9Y3B1 194 aa13.08□□□□□ -0.32
HMGN4-201ENST00000377575 ARPC1BO15143 372 aaKnown RBP13.07□□□□□ -0.32
HMGN4-201ENST00000377575 XRCC3O43542 346 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 CREBL2O60519 120 aaPredicted RBP13.07□□□□□ -0.32
HMGN4-201ENST00000377575 CRYGBP07316 175 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 RPS19P39019 145 aaKnown RBP13.07□□□□□ -0.32
HMGN4-201ENST00000377575 KRTAP10-11P60412 298 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 UBE2KP61086 200 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 C9orf66Q5T8R8 295 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 DMRTA1Q5VZB9 504 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 HOGA1Q86XE5 327 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 TEX45Q8NA69 505 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 OR1N2Q8NGR9 330 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 OR5B12Q96R08 314 aa13.07□□□□□ -0.32
HMGN4-201ENST00000377575 IGKV1D-13A0A0B4J2D9 117 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 TUSC2O75896 110 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 LGALS1P09382 135 aaKnown RBP13.06□□□□□ -0.32
HMGN4-201ENST00000377575 IGKV1-13P0DP09 117 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 TPPP2P59282 170 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 TMEM69Q5SWH9 247 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 OVCH2Q7RTZ1 564 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 GVQW1Q8N7I0 195 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 SAMD12Q8N8I0 201 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 CASTOR1Q8WTX7 329 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 SLC25A46Q96AG3 418 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 KCTD12Q96CX2 325 aaKnown RBP13.06□□□□□ -0.32
HMGN4-201ENST00000377575 TMEM68Q96MH6 324 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 HSD17B10Q99714 261 aaKnown RBP13.06□□□□□ -0.32
HMGN4-201ENST00000377575 DCUN1D5Q9BTE7 237 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 FUNDC2Q9BWH2 189 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 IFT46Q9NQC8 304 aa13.06□□□□□ -0.32
HMGN4-201ENST00000377575 SRRM4A7MD48 611 aaKnown RBP13.05□□□□□ -0.32
HMGN4-201ENST00000377575 SEC14L6B5MCN3 397 aa13.05□□□□□ -0.32
HMGN4-201ENST00000377575 H3BUA1 57 aa13.05□□□□□ -0.32
HMGN4-201ENST00000377575 FCGR3BO75015 233 aa13.05□□□□□ -0.32
HMGN4-201ENST00000377575 PJVKQ0ZLH3 352 aa13.05□□□□□ -0.32
HMGN4-201ENST00000377575 POC5Q8NA72 575 aa13.05□□□□□ -0.32
HMGN4-201ENST00000377575 OR4S2Q8NH73 311 aa13.05□□□□□ -0.32
HMGN4-201ENST00000377575 ZNF355PQ9NSJ1 428 aa13.05□□□□□ -0.32
HMGN4-201ENST00000377575 LINC01619G3V211 115 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 K7EIL1 84 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 IGLV2-14P01704 120 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 TRGV3P03979 118 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 FCGR2CP31995 323 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 NCS1P62166 190 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 SSBP2P81877 361 aaPredicted RBP13.04□□□□□ -0.32
HMGN4-201ENST00000377575 DGCR2P98153 550 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 DCTN2Q13561 401 aaKnown RBP13.04□□□□□ -0.32
HMGN4-201ENST00000377575 MSMO1Q15800 293 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 ZNF66Q6ZN08 573 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 OR13F1Q8NGS4 319 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 TCTEX1D2Q8WW35 142 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 MS4A10Q96PG2 267 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 PHB2Q99623 299 aa13.04□□□□□ -0.32
HMGN4-201ENST00000377575 RAMP3O60896 148 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 ACTL6BO94805 426 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 PPYP01298 95 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 SAA1P0DJI8 122 aaPredicted RBP13.03□□□□□ -0.32
HMGN4-201ENST00000377575 PTHLHP12272 177 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 AADACP22760 399 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 CDK10Q15131 360 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 TNXAQ16473 311 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 PRSS8Q16651 343 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 OR2B11Q5JQS5 317 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 ASPHD1Q5U4P2 390 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 IDO2Q6ZQW0 420 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 OR5AP2Q8NGF4 316 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 SECTM1Q8WVN6 248 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 SNAPC3Q92966 411 aa13.03□□□□□ -0.32
HMGN4-201ENST00000377575 ALX4Q9H161 411 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms