RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 SLC35G3Q8N808 338 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 GRPEL2Q8TAA5 225 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 RBPMSQ93062 196 aaKnown RBP16.1■□□□□ 0.17
CLN3-205ENST00000359984 IL22RA2Q969J5 263 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 RPEQ96AT9 228 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 RBMXL1Q96E39 390 aaKnown RBP16.1■□□□□ 0.17
CLN3-205ENST00000359984 ZANQ9Y493 2812 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 LEUTXA8MZ59 168 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 GAPDHP04406 335 aaKnown RBP16.1■□□□□ 0.17
CLN3-205ENST00000359984 OR5M8Q8NGP6 311 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 CD300LFQ8TDQ1 290 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 NOTCH2Q04721 2471 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 MPTX1A8MV57 137 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 S1PR2O95136 353 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 AVPP01185 164 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 KIR2DS2P43631 304 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 LGALS4P56470 323 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 GGNBP1Q5YKI7 109 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 CYB5R2Q6BCY4 276 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 OR5AN1Q8NGI8 311 aa16.09■□□□□ 0.17
CLN3-205ENST00000359984 H0YJW9 148 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 J3QLI3 93 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 SMAD7O15105 426 aaKnown RBP16.08■□□□□ 0.17
CLN3-205ENST00000359984 RBFOX2O43251 390 aaKnown RBP eCLIP16.08■□□□□ 0.17
CLN3-205ENST00000359984 RPA2P15927 270 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 CEACAM3P40198 252 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 MINOS1Q5TGZ0 78 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 SLC7A5P1Q8MH63 180 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 C17orf50Q8WW18 174 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 SLC35D1Q9NTN3 355 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 HILPDAQ9Y5L2 63 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 MINOS1-NBL1R4GNA1 71 aa16.08■□□□□ 0.17
CLN3-205ENST00000359984 AKAP9Q99996 3911 aa16.08■□□□□ 0.16
CLN3-205ENST00000359984 IGHV1-3A0A0C4DH29 117 aa16.08■□□□□ 0.16
CLN3-205ENST00000359984 FAM25EA8MYX2 175 aa16.08■□□□□ 0.16
CLN3-205ENST00000359984 IGHV3OR16-10A0A075B7F0 116 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 IGHV1-69DA0A0B4J2H0 117 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 C13orf42A0A1B0GVH6 325 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 DUXBA0A1W2PPF3 345 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 C5orf51A6NDU8 294 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 NPFFO15130 113 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 IFNA21P01568 189 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 IGHV1-69P01742 117 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 MIDNQ504T8 468 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 GSG1LQ6UXU4 331 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 PIP4P2Q8N4L2 257 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 OR4S2Q8NH73 311 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 ASB13Q8WXK3 278 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 AJUBAQ96IF1 538 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 SEC22AQ96IW7 307 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 OR10C1Q96KK4 312 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 PLEKHA2Q9HB19 425 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 TMED3Q9Y3Q3 217 aa16.07■□□□□ 0.16
CLN3-205ENST00000359984 TBL2Q9Y4P3 447 aaKnown RBP16.07■□□□□ 0.16
CLN3-205ENST00000359984 TRAV40A0A0B4J280 105 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 A0A1W2PPI3 338 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 TXNL1O43396 289 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 CRYZL1O95825 349 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 HPRT1P00492 218 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 IGKV1-5P01602 117 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 APOA2P02652 100 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 EPHA1P21709 976 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 PAX6P26367 422 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 SAA4P35542 130 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 TAGLNQ01995 201 aaKnown RBP16.06■□□□□ 0.16
CLN3-205ENST00000359984 RTL8BQ17RB0 113 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 MOB3BQ86TA1 216 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 DYNAPQ8N1N2 210 aa16.06■□□□□ 0.16
CLN3-205ENST00000359984 IGKV1-16P04430 117 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 IGHV4-38-2P0DP08 117 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 VDAC1P21796 283 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 SRSF4Q08170 494 aaKnown RBP16.05■□□□□ 0.16
CLN3-205ENST00000359984 SSX2Q16385 188 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 NMSQ5H8A3 153 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 RUSC1-AS1Q66K80 236 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 IGHV3-72A0A0B4J1Y9 119 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 PIGBOS1A0A0B4J2F0 54 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 A0A0G2JRQ6 117 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 H7C2Y5 167 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 KRASP01116 189 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 RRASP10301 218 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 G6PCP35575 357 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 KLF17Q5JT82 389 aaPredicted RBP16.05■□□□□ 0.16
CLN3-205ENST00000359984 GPR157Q5UAW9 335 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 PDCD10Q9BUL8 212 aa16.05■□□□□ 0.16
CLN3-205ENST00000359984 FLNBO75369 2602 aaKnown RBP16.04■□□□□ 0.16
CLN3-205ENST00000359984 OOSP1A8MZH6 123 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 MC5RP33032 325 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 AKR1C2P52895 323 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 DHRS7BQ6IAN0 325 aaPredicted RBP16.04■□□□□ 0.16
CLN3-205ENST00000359984 ZNF767PQ75MW2 155 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 OR8H3Q8N146 312 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 GPR146Q96CH1 333 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 MALSU1Q96EH3 234 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 C2orf50Q96LR7 162 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 COMMD9Q9P000 198 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 WASHC3Q9Y3C0 194 aa16.04■□□□□ 0.16
CLN3-205ENST00000359984 TIMM23O14925 209 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 IZUMO4Q1ZYL8 232 aa16.03■□□□□ 0.16
CLN3-205ENST00000359984 IAH1Q2TAA2 248 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms