RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 IGKV1D-13A0A0B4J2D9 117 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 SHOXO15266 292 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 IGLV2-14P01704 120 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 HLA-DQB1P01920 261 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 CTXN2P0C2S0 81 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 IGKV1-13P0DP09 117 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 PTHLHP12272 177 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 LUMP51884 338 aaPredicted RBP14.25□□□□□ -0.13
CLN3-202ENST00000355477 TAGLNQ01995 201 aaKnown RBP14.25□□□□□ -0.13
CLN3-202ENST00000355477 RTL8BQ17RB0 113 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 MRGPRG-AS1Q2M3A8 158 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 GVQW1Q8N7I0 195 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 ARPC1AQ92747 370 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 DPF1Q92782 380 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 HARBI1Q96MB7 349 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 MS4A10Q96PG2 267 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 SPATA2Q9UM82 520 aa14.25□□□□□ -0.13
CLN3-202ENST00000355477 ZNF616Q08AN1 781 aa14.24□□□□□ -0.13
CLN3-202ENST00000355477 TIMM50Q3ZCQ8 353 aa14.24□□□□□ -0.13
CLN3-202ENST00000355477 ZNF645Q8N7E2 425 aa14.24□□□□□ -0.13
CLN3-202ENST00000355477 GRPEL2Q8TAA5 225 aa14.24□□□□□ -0.13
CLN3-202ENST00000355477 ADTRPQ96IZ2 230 aa14.24□□□□□ -0.13
CLN3-202ENST00000355477 AUNIPQ9H7T9 357 aa14.24□□□□□ -0.13
CLN3-202ENST00000355477 A0A0A6YYH2 397 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 A6NJ64 397 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 TRIM64CA6NLI5 447 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 CNIH1O95406 144 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 CRYZL1O95825 349 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 RRASP10301 218 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 RPL30P62888 115 aaKnown RBP14.23□□□□□ -0.13
CLN3-202ENST00000355477 CBX3Q13185 183 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 BEST4Q8NFU0 473 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 OR5T1Q8NG75 326 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 VCX3AQ9NNX9 186 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 DIABLOQ9NR28 239 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 SCOCQ9UIL1 159 aa14.23□□□□□ -0.13
CLN3-202ENST00000355477 SEC14L6B5MCN3 397 aa14.22□□□□□ -0.13
CLN3-202ENST00000355477 TUSC2O75896 110 aa14.22□□□□□ -0.13
CLN3-202ENST00000355477 IGHV3-11P01762 117 aa14.22□□□□□ -0.13
CLN3-202ENST00000355477 FCER2P06734 321 aa14.22□□□□□ -0.13
CLN3-202ENST00000355477 OR8U8P0C7N1 319 aa14.22□□□□□ -0.13
CLN3-202ENST00000355477 DEFB121Q5J5C9 76 aa14.22□□□□□ -0.13
CLN3-202ENST00000355477 PYHIN1Q6K0P9 492 aa14.22□□□□□ -0.13
CLN3-202ENST00000355477 HOGA1Q86XE5 327 aa14.22□□□□□ -0.13
CLN3-202ENST00000355477 RBMX2Q9Y388 322 aaKnown RBP14.22□□□□□ -0.13
CLN3-202ENST00000355477 TMEM127O75204 238 aa14.21□□□□□ -0.13
CLN3-202ENST00000355477 LGALS1P09382 135 aaKnown RBP14.21□□□□□ -0.13
CLN3-202ENST00000355477 TPPP2P59282 170 aa14.21□□□□□ -0.13
CLN3-202ENST00000355477 DGCR2P98153 550 aa14.21□□□□□ -0.13
CLN3-202ENST00000355477 EIF4EBP1Q13541 118 aaPredicted RBP14.21□□□□□ -0.13
CLN3-202ENST00000355477 C9orf66Q5T8R8 295 aa14.21□□□□□ -0.13
CLN3-202ENST00000355477 IDO2Q6ZQW0 420 aa14.21□□□□□ -0.13
CLN3-202ENST00000355477 CROCCP3Q8IVE0 287 aa14.21□□□□□ -0.13
CLN3-202ENST00000355477 TEX45Q8NA69 505 aa14.21□□□□□ -0.13
CLN3-202ENST00000355477 DCUN1D4Q92564 292 aa14.21□□□□□ -0.13
CLN3-202ENST00000355477 XRCC3O43542 346 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 FCGR3BO75015 233 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 SLURP1P55000 103 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 ARPC4P59998 168 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 UBE2KP61086 200 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 OR2B11Q5JQS5 317 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 KCTD9Q7L273 389 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 OSR1Q8TAX0 266 aaPredicted RBP14.2□□□□□ -0.14
CLN3-202ENST00000355477 RHOVQ96L33 236 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 GPHA2Q96T91 129 aa14.2□□□□□ -0.14
CLN3-202ENST00000355477 IGHV4OR15-8A0A075B7B6 117 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 A0A087WW49 117 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 MEIS3P1A6NDR6 274 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 SLC22A5O76082 557 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 TRGV3P03979 118 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 APELAP0DMC3 54 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 AADACP22760 399 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 FCGR2CP31995 323 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 BRWD1-AS2P59051 145 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 PRSS8Q16651 343 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 VMA21Q3ZAQ7 101 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 UBE2NLQ5JXB2 153 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 OVCH2Q7RTZ1 564 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 SAMD12Q8N8I0 201 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 POC5Q8NA72 575 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 SNAPC3Q92966 411 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 DLX4Q92988 240 aaPredicted RBP14.19□□□□□ -0.14
CLN3-202ENST00000355477 S100A16Q96FQ6 103 aaKnown RBP14.19□□□□□ -0.14
CLN3-202ENST00000355477 FUNDC2Q9BWH2 189 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 SLA2Q9H6Q3 261 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 ZNF355PQ9NSJ1 428 aa14.19□□□□□ -0.14
CLN3-202ENST00000355477 MSGN1A6NI15 193 aa14.18□□□□□ -0.14
CLN3-202ENST00000355477 LINC01619G3V211 115 aa14.18□□□□□ -0.14
CLN3-202ENST00000355477 SAA1P0DJI8 122 aaPredicted RBP14.18□□□□□ -0.14
CLN3-202ENST00000355477 CD40LGP29965 261 aa14.18□□□□□ -0.14
CLN3-202ENST00000355477 NCS1P62166 190 aa14.18□□□□□ -0.14
CLN3-202ENST00000355477 SLC25A46Q96AG3 418 aa14.18□□□□□ -0.14
CLN3-202ENST00000355477 HSD17B10Q99714 261 aaKnown RBP14.18□□□□□ -0.14
CLN3-202ENST00000355477 DCUN1D5Q9BTE7 237 aa14.18□□□□□ -0.14
CLN3-202ENST00000355477 CCL28Q9NRJ3 127 aa14.18□□□□□ -0.14
CLN3-202ENST00000355477 PRELID3BQ9Y3B1 194 aa14.18□□□□□ -0.14
CLN3-202ENST00000355477 DNAH9Q9NYC9 4486 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 OVOL1O14753 267 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 RAMP3O60896 148 aa14.17□□□□□ -0.14
CLN3-202ENST00000355477 HSPB1P04792 205 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms