RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 KITLGP21583 273 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 CDC34P49427 236 aaPredicted RBP15.61■□□□□ 0.09
CPSF3-201ENST00000238112 EDDM3AQ14507 147 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 LTC4SQ16873 150 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 TRAT1Q6PIZ9 186 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 TGIF2LYQ8IUE0 185 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 DEFB123Q8N688 67 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 R3HDM4Q96D70 268 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 LOXL4Q96JB6 756 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 QTRT1Q9BXR0 403 aaKnown RBP15.61■□□□□ 0.09
CPSF3-201ENST00000238112 IGHG3P01860 377 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 RTP5Q14D33 572 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 ZNF718Q3SXZ3 478 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 S100PBPQ96BU1 408 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 ANAPC16Q96DE5 110 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 USF3Q68DE3 2245 aa15.61■□□□□ 0.09
CPSF3-201ENST00000238112 SMCO3A2RU48 225 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 HRASP01112 189 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 GYPAP02724 150 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 CECR9P0C854 216 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 GPR12P47775 334 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 HTD2P86397 168 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 GUSBP1Q15486 140 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 DNLZQ5SXM8 178 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 VWA1Q6PCB0 445 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 TMEM183AQ8IXX5 376 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 C1orf162Q8NEQ5 155 aaPredicted RBP15.6■□□□□ 0.09
CPSF3-201ENST00000238112 HIST1H2BLQ99880 126 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 PRDM13Q9H4Q3 707 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 TUBG2Q9NRH3 451 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 C15orf62A8K5M9 175 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 C11orf94C9JXX5 98 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 DEFA4P12838 97 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 FOXF2Q12947 444 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 LRRC29Q8WV35 223 aa15.6■□□□□ 0.09
CPSF3-201ENST00000238112 CD1BP29016 333 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 KIR2DL2P43627 348 aaPredicted RBP15.59■□□□□ 0.09
CPSF3-201ENST00000238112 DEFA6Q01524 100 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 DCTN5Q9BTE1 182 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 GNG12Q9UBI6 72 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 A0A1W2PPQ1 181 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 C15orf65H3BRN8 121 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 FCGR3BO75015 233 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 VENTXO95231 258 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 OR9G9P0C7N8 305 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 GZMHP20718 246 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 CD177Q8N6Q3 437 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 ELOVL1Q9BW60 279 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 OR6C3Q9NZP0 311 aa15.59■□□□□ 0.09
CPSF3-201ENST00000238112 LY86O95711 162 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 PRDX2P32119 198 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 FAM3BP58499 235 aaPredicted RBP15.58■□□□□ 0.08
CPSF3-201ENST00000238112 RPP30P78346 268 aaKnown RBP15.58■□□□□ 0.08
CPSF3-201ENST00000238112 MZT1Q08AG7 82 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 PRAMEF5Q5TYX0 476 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 C9orf106Q8NAJ2 232 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 DIRC2Q96SL1 478 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 PCGF1Q9BSM1 259 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 WDR83OSQ9Y284 106 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 CACNA1DQ01668 2161 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 NCOR1O75376 2440 aa15.58■□□□□ 0.08
CPSF3-201ENST00000238112 HPRT1P00492 218 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 DUTP33316 252 aaKnown RBP15.57■□□□□ 0.08
CPSF3-201ENST00000238112 CCL11P51671 97 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 GAMTQ14353 236 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 CLEC12BQ2HXU8 276 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 SSX9Q7RTT3 188 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 PLPPR2Q96GM1 343 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 IFNA10P01566 189 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 OR5T1Q8NG75 326 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 OR1P1Q8NH06 330 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 OR4A16Q8NH70 328 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 DOCK11Q5JSL3 2073 aa15.57■□□□□ 0.08
CPSF3-201ENST00000238112 A0A1W2PPV4 95 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 PDE6DO43924 150 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 PAX5Q02548 391 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 MBNL2Q5VZF2 373 aaKnown RBP15.56■□□□□ 0.08
CPSF3-201ENST00000238112 OR2T10Q8NGZ9 312 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 TRAV38-1A0A0B4J264 116 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 IGHV2OR16-5A0A0B4J2B6 119 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 XKRY2A2RUG3 117 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 SOX15O60248 233 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 SRP14P37108 136 aaKnown RBP15.56■□□□□ 0.08
CPSF3-201ENST00000238112 EDDM3BP56851 147 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 SPCS3P61009 180 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 KCNIP4Q6PIL6 250 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 OR2Z1Q8NG97 314 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 FAM234AQ9H0X4 552 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 JPT1Q9UK76 154 aa15.56■□□□□ 0.08
CPSF3-201ENST00000238112 FAM90A9PA6NNJ1 464 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 M0R1X1 148 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 M0R296 226 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 WISP2O76076 250 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 ERVK-16P61578 105 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 GCSAMLQ5JQS6 135 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 CST9LP1Q5W188 147 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 Q8N7P7 452 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 LINC00469Q8N7U9 141 aa15.55■□□□□ 0.08
CPSF3-201ENST00000238112 HEYLQ9NQ87 328 aaPredicted RBP15.55■□□□□ 0.08
CPSF3-201ENST00000238112 AQP7O14520 342 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms