RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SMCO1Q147U7 214 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 ELOCQ15369 112 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 ACOT6Q3I5F7 207 aaPredicted RBP1.35□□□□□ -2.19
CD44-239ENST00000639002 ZCWPW2Q504Y3 356 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 TRMT12Q53H54 448 aaKnown RBP1.35□□□□□ -2.19
CD44-239ENST00000639002 CLLU1OSQ5K130 101 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 ELP2Q6IA86 826 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 C5orf46Q6UWT4 87 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 LYG2Q86SG7 212 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 DRAM1Q8N682 238 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 C12orf29Q8N999 325 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 OR2Z1Q8NG97 314 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 OR5H2Q8NGV7 314 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 OR8S1Q8NH09 359 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 OR51H1Q8NH63 302 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 OR1L1Q8NH94 360 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 OR2V1Q8NHB1 315 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 SLC35B4Q969S0 331 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 GALMQ96C23 342 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 ANKRD36BP1Q96IX9 119 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 SPACA5Q96QH8 159 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 OR7D2Q96RA2 312 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 LINC01587Q99440 93 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 GPER1Q99527 375 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 HOPXQ9BPY8 73 aaPredicted RBP1.35□□□□□ -2.19
CD44-239ENST00000639002 TMEM70Q9BUB7 260 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 DDA1Q9BW61 102 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 DCSTAMPQ9H295 470 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 BOLA2Q9H3K6 86 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 ZSCAN16Q9H4T2 348 aaPredicted RBP1.35□□□□□ -2.19
CD44-239ENST00000639002 ASB7Q9H672 318 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 ARMC1Q9NVT9 282 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 LINC00527Q9UJ94 153 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 PRELID3BQ9Y3B1 194 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 RIMBP3CA6NJZ7 1639 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 RIMBP3BA6NNM3 1639 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 DNMT1P26358 1616 aaKnown RBP1.35□□□□□ -2.19
CD44-239ENST00000639002 RIMBP3Q9UFD9 1639 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 MYO5BQ9ULV0 1848 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 CLUHO75153 1309 aa1.35□□□□□ -2.19
CD44-239ENST00000639002 COL5A3P25940 1745 aaPredicted RBP1.35□□□□□ -2.19
CD44-239ENST00000639002 VCANP13611 3396 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 RTL1A6NKG5 1358 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 KIF24Q5T7B8 1368 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 PCF11O94913 1555 aaKnown RBP1.34□□□□□ -2.19
CD44-239ENST00000639002 CFAP47Q6ZTR5 3102 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 LRP5O75197 1615 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 IGKV1-27A0A075B6S5 117 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 LOC105371267A0A1B0GV96 52 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TMEM72A0PK05 275 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 FUOMA2VDF0 154 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 OR6C6A6NF89 314 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 EVPLLA8MZ36 301 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 EEF1E1-BLOC1S5C9J1V9 151 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 UPK1AO00322 258 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 GYG2O15488 501 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 EEF1E1O43324 174 aaKnown RBP1.34□□□□□ -2.19
CD44-239ENST00000639002 PDE6DO43924 150 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 STK16O75716 305 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 EPPINO95925 133 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 IGLV7-43P04211 117 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 ATP5G1P05496 136 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SERPINA7P05543 415 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SULT1A3P0DMM9 295 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SULT1A4P0DMN0 295 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 IDO1P14902 403 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 KCNE1P15382 129 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 CXCL2P19875 107 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 IL3RAP26951 378 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 IMPA1P29218 277 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 S100GP29377 79 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SERPINB1P30740 379 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 RPL5P46777 297 aaKnown RBP1.34□□□□□ -2.19
CD44-239ENST00000639002 TAS2R41P59536 307 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 RPS11P62280 158 aaKnown RBP eCLIP1.34□□□□□ -2.19
CD44-239ENST00000639002 HLA-DRB3P79483 266 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 FABP5Q01469 135 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 CAV1Q03135 178 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 ATP5G2Q06055 141 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TNFRSF9Q07011 255 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TMEM267Q0VDI3 215 aaPredicted RBP1.34□□□□□ -2.19
CD44-239ENST00000639002 FABP9Q0Z7S8 132 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 PRDX4Q13162 271 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 PMAIP1Q13794 54 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 LUZP6Q538Z0 58 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TEX36Q5VZQ5 186 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SPATA31B1PQ5VZV4 182 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TMEM215Q68D42 235 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 KDM4DQ6B0I6 523 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 GLYATQ6IB77 296 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 SMARCD3Q6STE5 483 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 OOSP2Q86WS3 158 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 PDPNQ86YL7 162 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 C20orf196Q8IYI0 205 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 ORMDL3Q8N138 153 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 STX19Q8N4C7 294 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 UBL4BQ8N7F7 174 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 TMEM35BQ8NCS4 154 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 ZNF439Q8NDP4 499 aa1.34□□□□□ -2.19
CD44-239ENST00000639002 OR2M7Q8NG81 312 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms