RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 CSMD3Q7Z407 3707 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 DNAH10Q8IVF4 4471 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 IGHV3-72A0A0B4J1Y9 119 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TRAV39A0A0B4J263 110 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TRAV38-1A0A0B4J264 116 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 A0A1B0GUS0 222 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 A0A1B0GVI7 797 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 A0A1W2PPE3 182 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 DHRS12A0PJE2 317 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 A6NIZ1 184 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 H3BSA7 217 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 CXCR6O00574 342 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 BHLHE40O14503 412 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 NDUFB3O43676 98 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 ZNF780AO75290 641 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 NDUFB2O95178 105 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 RRASP10301 218 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 PPIBP23284 216 aaKnown RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 PAX7P23759 505 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 RBM34P42696 430 aaKnown RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 OMPP47874 163 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 NUDT2P50583 147 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 EDDM3BP56851 147 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 ZNF121P58317 390 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 RAP1BP61224 184 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 PCBD1P61457 104 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 HERVK_113P61574 105 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 RAP1AP62834 184 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 HIST1H3AP68431 136 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 CBX1P83916 185 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 DEFA5Q01523 94 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 BDH1Q02338 343 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 LIPEQ05469 1076 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 PRKCDQ05655 676 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 PRDX4Q13162 271 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 MADCAM1Q13477 382 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 DIAPH2-AS1Q14236 149 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 GAMTQ14353 236 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TRAM2Q15035 370 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 MICBQ29980 383 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 ZBED5Q49AG3 693 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 LINC01620Q4KN68 170 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 ABCA11PQ4W5N1 156 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TNFAIP8L3Q5GJ75 292 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 HIST2H3PS2Q5TEC6 136 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TEX36Q5VZQ5 186 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 PLCXD3Q63HM9 321 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 HAGHLQ6PII5 290 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 MBOAT2Q6ZWT7 520 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 HIST2H3AQ71DI3 136 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 CCDC80Q76M96 950 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TCF23Q7RTU1 214 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 ERASQ7Z444 233 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 HDDC2Q7Z4H3 204 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 DPPA2Q7Z7J5 298 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 NDUFA11Q86Y39 141 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 SAXO1Q8IYX7 474 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 OFCC1Q8IZS5 231 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 FAM71E2Q8N5Q1 922 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TMEM86BQ8N661 226 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 OR4S1Q8NGB4 309 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 OR5AU1Q8NGC0 362 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 OR8B12Q8NGG6 310 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 OR6K6Q8NGW6 343 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 OR6N2Q8NGY6 317 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 UBALD1Q8TB05 177 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 NDNFQ8TB73 568 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TRMT10AQ8TBZ6 339 aaKnown RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 SLC7A13Q8TCU3 470 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 CASTOR1Q8WTX7 329 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 ACOT11Q8WXI4 607 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 LEAP2Q969E1 77 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 ITFG2Q969R8 447 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 SLC35B4Q969S0 331 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 PINX1Q96BK5 328 aaKnown RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 SGK3Q96BR1 496 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TLCD1Q96CP7 247 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 SLAMF6Q96DU3 332 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 RNF185Q96GF1 192 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 ROPN1BQ9BZX4 212 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 CHST6Q9GZX3 395 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 HDHD2Q9H0R4 259 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 OR52D1Q9H346 318 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TMBIM4Q9HC24 238 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 KPTNQ9Y664 436 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 COMMD3-BMI1R4GMX3 469 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 U3KQK5 164 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 DYNC1H1Q14204 4646 aaKnown RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 TET2Q6N021 2002 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-219ENST00000556413 FRAS1Q86XX4 4008 aa1.77□□□□□ -2.13
SCFD1-219ENST00000556413 KMT2AQ03164 3969 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 A0A0U1RQV5 110 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 GMNCA6NCL1 334 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 TRIM64CA6NLI5 447 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 RFPL4AA6NLU0 287 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 OR2AT4A6NND4 320 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 ANKRD30BLA7E2S9 258 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 CENPBD1B2RD01 187 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 RFPL4AL1F8VTS6 287 aa1.76□□□□□ -2.13
SCFD1-219ENST00000556413 H0YHG0 523 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms