RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SPTBN4Q9H254 2564 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 OR4A8P0C604 315 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 TNFSF4P23510 183 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 PTAFRP25105 342 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 HNF4GQ14541 408 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 ADAM5Q6NVV9 412 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 ZNF66Q6ZN08 573 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 LILRB2Q8N423 598 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.54□□□□□ -0.24
COL4A1-204ENST00000543140 HSPB7Q9UBY9 170 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 JPT1Q9UK76 154 aa13.54□□□□□ -0.24
COL4A1-204ENST00000543140 M0R1X1 148 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 FCGR3BO75015 233 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 CLDN14O95500 239 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 H2AFB1P0C5Y9 115 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 RPS16P62249 146 aaKnown RBP13.53□□□□□ -0.24
COL4A1-204ENST00000543140 ADIPOQQ15848 244 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 ETV3LQ6ZN32 361 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 ZNF525Q8N782 197 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 FAM216BQ8N7L0 139 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 NUP37Q8NFH4 326 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 SCGB1C1Q8TD33 95 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 ZDHHC16Q969W1 377 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 C14orf79Q96F83 325 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 ZNF835Q9Y2P0 537 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 SLC31A2O15432 143 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 DUTP33316 252 aaKnown RBP13.53□□□□□ -0.24
COL4A1-204ENST00000543140 SSX9Q7RTT3 188 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 ZNF561Q8N587 486 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 FAM222BQ8WU58 562 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 SFT2D1Q8WV19 159 aa13.53□□□□□ -0.24
COL4A1-204ENST00000543140 MARCH11A6NNE9 402 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 FAM90A26D6RGX4 464 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 AKR1C3P42330 323 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 HBG1P69891 147 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 HBG2P69892 147 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 CR1LQ2VPA4 569 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 STUMQ69YW2 141 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 SPSB3Q6PJ21 355 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 CLRN3Q8NCR9 226 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 OR6C3Q9NZP0 311 aa13.52□□□□□ -0.24
COL4A1-204ENST00000543140 YPEL1O60688 119 aa13.52□□□□□ -0.25
COL4A1-204ENST00000543140 ZG16O60844 167 aa13.52□□□□□ -0.25
COL4A1-204ENST00000543140 CD55P08174 381 aa13.52□□□□□ -0.25
COL4A1-204ENST00000543140 OR13C7P0DN81 318 aa13.52□□□□□ -0.25
COL4A1-204ENST00000543140 C17orf58Q2M2W7 97 aa13.52□□□□□ -0.25
COL4A1-204ENST00000543140 RBMXL1Q96E39 390 aaKnown RBP13.52□□□□□ -0.25
COL4A1-204ENST00000543140 YPEL2Q96QA6 119 aa13.52□□□□□ -0.25
COL4A1-204ENST00000543140 OR4C12Q96R67 309 aa13.52□□□□□ -0.25
COL4A1-204ENST00000543140 PBDC1Q9BVG4 233 aa13.52□□□□□ -0.25
COL4A1-204ENST00000543140 SEBOXQ9HB31 216 aaPredicted RBP13.52□□□□□ -0.25
COL4A1-204ENST00000543140 NBASA2RRP1 2371 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 F2RL2O00254 374 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 C1orf229Q6ZS94 237 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-204ENST00000543140 VKORC1L1Q8N0U8 176 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 R3HDM4Q96D70 268 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 SDSLQ96GA7 329 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 GAFA1Q96PS6 74 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 IFI27L2Q9H2X8 130 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 VSIRQ9H7M9 311 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 JKAMPQ9P055 326 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 IRF2P14316 349 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 OR2B8PP59922 312 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 SLC38A11Q08AI6 406 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 HAGHQ16775 308 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 FAM122CQ6P4D5 195 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 LFNGQ8NES3 379 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 WFIKKN1Q96NZ8 548 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 KPTNQ9Y664 436 aa13.51□□□□□ -0.25
COL4A1-204ENST00000543140 UBE2L5PA0A1B0GUS4 154 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 RAB29O14966 203 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 CGB3P0DN86 165 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 CGB7P0DN87 165 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 DHRS7BQ6IAN0 325 aaPredicted RBP13.5□□□□□ -0.25
COL4A1-204ENST00000543140 TCTEX1D1Q8N7M0 179 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 C20orf24Q9BUV8 137 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 PCP4L1A6NKN8 68 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 TMEM14EPQ6UXP3 125 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 DTD1Q8TEA8 209 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 QTRT1Q9BXR0 403 aaKnown RBP13.5□□□□□ -0.25
COL4A1-204ENST00000543140 ZNF665Q9H7R5 613 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 RPRMQ9NS64 109 aa13.5□□□□□ -0.25
COL4A1-204ENST00000543140 TRGV10A0A0A0MS01 117 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 KBTBD11-OT1A0A1B0GTJ5 212 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 RBFOX3A6NFN3 312 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 CEBPZOSA8MTT3 80 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 C17orf100A8MU93 164 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 TMPRSS2O15393 492 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 OR9G9P0C7N8 305 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 TLE4Q04727 773 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 LRRC75BQ2VPJ9 315 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 TCF23Q7RTU1 214 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 CD300LFQ8TDQ1 290 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 RND1Q92730 232 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 LAMP3Q9UQV4 416 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 MSRB2Q9Y3D2 182 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 ATRXP46100 2492 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 CT45A1Q5HYN5 189 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 CT45A3Q8NHU0 189 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 Q8TCH9 128 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms