RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 GOSR1O95249 250 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 HPRT1P00492 218 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 ZNF735P0CB33 412 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 Q8NFD4 153 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 OR5C1Q8NGR4 320 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 OR1P1Q8NH06 330 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 OR4X1Q8NH49 305 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 RAB24Q969Q5 203 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 GINS3Q9BRX5 216 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 PLEKHJ1Q9NW61 149 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 C1orf123Q9NWV4 160 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 PITPNC1Q9UKF7 332 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 MRPS28Q9Y2Q9 187 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 LY6HO94772 140 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 TFF1P04155 84 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 THBDP07204 575 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 OR5AC1P0C628 307 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 ATP6V0CP27449 155 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 RAB7AP51149 207 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 RIPPLY3P57055 190 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 TCTAP57738 103 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 BAGE3Q86Y29 109 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 BAGE2Q86Y30 109 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 TMEM204Q9BSN7 226 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 TMEM100Q9NV29 134 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 CISD1Q9NZ45 108 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 UBE2J1Q9Y385 318 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 V9GYS6 101 aa7.34□□□□□ -1.23
LIMCH1-209ENST00000509277 NAV2Q8IVL1 2488 aa7.34□□□□□ -1.24
LIMCH1-209ENST00000509277 PMCHP20382 165 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 KLF3P57682 345 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 IZUMO4Q1ZYL8 232 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 C5orf24Q7Z6I8 188 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 PRR18Q8N4B5 295 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 OR10A7Q8NGE5 316 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 ITLN2Q8WWU7 325 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 HS3ST6Q96QI5 342 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 ELOVL5Q9NYP7 299 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 ASH1LQ9NR48 2969 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 TLN2Q9Y4G6 2542 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 CDIPTO14735 213 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 JOSD1Q15040 202 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 KISS1Q15726 138 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 PLAC9Q5JTB6 97 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 Q6ZN92 141 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 C6orf201Q7Z4U5 140 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 ZDHHC23Q8IYP9 409 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 OR52M1Q8NGK5 317 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 OR11L1Q8NGX0 322 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 MALSU1Q96EH3 234 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 NOL4LQ96MY1 436 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 VAMP8Q9BV40 100 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 WFDC1Q9HC57 220 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 ELOA3CA0A087WX78 387 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 F8VVB4 439 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 F8VWA3 439 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 SRSF10O75494 262 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 IGKV3-15P01624 115 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 UBE2G2P60604 165 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 GNB2P62879 340 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 HIST1H3AP68431 136 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 SLC35B1P78383 322 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 FAM201AQ5SY85 155 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 UNQ9370/PRO34162Q6UXP9 181 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 C1QL2Q7Z5L3 287 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 TMEM256Q8N2U0 113 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 C1orf162Q8NEQ5 155 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 OR13D1Q8NGV5 346 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 UBALD1Q8TB05 177 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 C1QTNF5Q9BXJ0 243 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 NMES1Q9C002 83 aa7.33□□□□□ -1.24
LIMCH1-209ENST00000509277 hCG_38984A0A1B0GV85 526 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 VSIG8P0DPA2 414 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 C10orf91Q5T1B1 145 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 UNQ5815/PRO19632Q6UWF5 114 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 LPAR2Q9HBW0 351 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 IGKV1-9A0A0C4DH69 117 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 LYNX1G3V0Z9 82 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 LYNX1P0DP58 116 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 GALR1P47211 349 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 TMEM267Q0VDI3 215 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 ZNF154Q13106 437 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 CNN3Q15417 329 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 FAM78BQ5VT40 261 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 RTN4IP1Q8WWV3 396 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 ZC2HC1AQ96GY0 325 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 SCGB3A2Q96PL1 93 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 RSG1Q9BU20 258 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 ARV1Q9H2C2 271 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 SLC2A9Q9NRM0 540 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 TRBV5-5A0A0J9YX44 114 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 VSTM5A8MXK1 200 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 TAAR5O14804 337 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 ST8SIA3O43173 380 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 OR7C1O76099 320 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 IAPPP10997 89 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 DEFA4P12838 97 aa7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 OTX1P32242 354 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-209ENST00000509277 MSMPQ1L6U9 139 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms