RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 C17orf98A8MV24 154 aa17.4■□□□□ 0.38
PTPRF-207ENST00000436724 CLDN1O95832 211 aa17.4■□□□□ 0.38
PTPRF-207ENST00000436724 IGKV1-5P01602 117 aa17.4■□□□□ 0.38
PTPRF-207ENST00000436724 GPR12P47775 334 aa17.4■□□□□ 0.38
PTPRF-207ENST00000436724 ZNF816Q0VGE8 651 aaPredicted RBP17.4■□□□□ 0.38
PTPRF-207ENST00000436724 RPL39P5Q59GN2 51 aa17.4■□□□□ 0.38
PTPRF-207ENST00000436724 TMEM200BQ69YZ2 307 aa17.4■□□□□ 0.38
PTPRF-207ENST00000436724 Q6ZRM9 215 aa17.4■□□□□ 0.38
PTPRF-207ENST00000436724 ZNF462Q96JM2 2506 aa17.4■□□□□ 0.38
PTPRF-207ENST00000436724 RNF212BA8MTL3 300 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 ST8SIA3O43173 380 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 LPAR6P43657 344 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 EIF5AP63241 154 aaKnown RBP17.39■□□□□ 0.37
PTPRF-207ENST00000436724 LRRC10Q5BKY1 277 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 CT45A1Q5HYN5 189 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 AVPI1Q5T686 147 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 IL34Q6ZMJ4 242 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 C1orf229Q6ZS94 237 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-207ENST00000436724 CT45A3Q8NHU0 189 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 RNASE11Q8TAA1 199 aaKnown RBP17.39■□□□□ 0.37
PTPRF-207ENST00000436724 MAGT1Q9H0U3 335 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 HRH4Q9H3N8 390 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 TMEM231Q9H6L2 316 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 IDI2-AS1Q9NZ38 188 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 RCL1Q9Y2P8 373 aaKnown RBP17.39■□□□□ 0.37
PTPRF-207ENST00000436724 CTRB1P17538 263 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 POLR2GP62487 172 aaKnown RBP eCLIP17.39■□□□□ 0.37
PTPRF-207ENST00000436724 CTRB2Q6GPI1 263 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 FAM122CQ6P4D5 195 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 CLEC9AQ6UXN8 241 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 SPAG16Q8N0X2 631 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 SPIN2AQ99865 258 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 SPIN2BQ9BPZ2 258 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 RAB1BQ9H0U4 201 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 KAAG1Q9UBP8 84 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 FBXL17Q9UF56 701 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 AKAP6Q13023 2319 aa17.39■□□□□ 0.37
PTPRF-207ENST00000436724 ASH1LQ9NR48 2969 aaKnown RBP17.38■□□□□ 0.37
PTPRF-207ENST00000436724 CLEC18AA5D8T8 446 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 NKX2-1P43699 371 aaPredicted RBP17.38■□□□□ 0.37
PTPRF-207ENST00000436724 GNG10P50151 68 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 TMEM33P57088 247 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 CLEC18CQ8NCF0 446 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 DMBX1Q8NFW5 382 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 ABHD14AQ9BUJ0 271 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 LINC00574Q9H8X3 128 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 POMT1Q9Y6A1 747 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 RNF224P0DH78 156 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 IGFBP2P18065 325 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 CATR1Q13166 79 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 SVBPQ8N300 66 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 CLRN3Q8NCR9 226 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 RAB9BQ9NP90 201 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 ZNRD1Q9P1U0 126 aa17.38■□□□□ 0.37
PTPRF-207ENST00000436724 CARHSP1Q9Y2V2 147 aaKnown RBP17.38■□□□□ 0.37
PTPRF-207ENST00000436724 F8W036 122 aa17.37■□□□□ 0.37
PTPRF-207ENST00000436724 GAPDHP04406 335 aaKnown RBP17.37■□□□□ 0.37
PTPRF-207ENST00000436724 SULT1A2P50226 295 aa17.37■□□□□ 0.37
PTPRF-207ENST00000436724 BLOC1S1P78537 153 aa17.37■□□□□ 0.37
PTPRF-207ENST00000436724 MSMO1Q15800 293 aa17.37■□□□□ 0.37
PTPRF-207ENST00000436724 NCR3LG1Q68D85 454 aa17.37■□□□□ 0.37
PTPRF-207ENST00000436724 EIF5AL1Q6IS14 154 aaKnown RBP17.37■□□□□ 0.37
PTPRF-207ENST00000436724 BSCL2Q96G97 398 aaPredicted RBP17.37■□□□□ 0.37
PTPRF-207ENST00000436724 UBTD1Q9HAC8 227 aa17.37■□□□□ 0.37
PTPRF-207ENST00000436724 TREM1Q9NP99 234 aa17.37■□□□□ 0.37
PTPRF-207ENST00000436724 UQCC1Q9NVA1 299 aa17.37■□□□□ 0.37
PTPRF-207ENST00000436724 E5RGE8 158 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 S1PR2O95136 353 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 DUTP33316 252 aaKnown RBP17.36■□□□□ 0.37
PTPRF-207ENST00000436724 MEF2CQ06413 473 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-207ENST00000436724 DTX2Q86UW9 622 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 ZNF714Q96N38 554 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 SMIM3Q9BZL3 60 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 CACNG5Q9UF02 275 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 NSG2Q9Y328 171 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 FAM96BQ9Y3D0 163 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 DOCK11Q5JSL3 2073 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 UTP20O75691 2785 aaKnown RBP17.36■□□□□ 0.37
PTPRF-207ENST00000436724 DOPEY1Q5JWR5 2465 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 M0R1X1 148 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 FBXO24O75426 580 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 KRASP01116 189 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 IGHV2-70P01814 119 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 BTNL8Q6UX41 500 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 ZNF66Q6ZN08 573 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 ZNF439Q8NDP4 499 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 HSD17B10Q99714 261 aaKnown RBP17.36■□□□□ 0.37
PTPRF-207ENST00000436724 PLEKHA2Q9HB19 425 aa17.36■□□□□ 0.37
PTPRF-207ENST00000436724 RPUSD1Q9UJJ7 312 aaKnown RBP17.36■□□□□ 0.37
PTPRF-207ENST00000436724 NDUFA2O43678 99 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 SSSCA1O60232 199 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 MED6O75586 246 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 JTBO76095 146 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 G6PCP35575 357 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 CDKN1AP38936 164 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 CAV2P51636 162 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 RBMXL1Q96E39 390 aaKnown RBP17.35■□□□□ 0.37
PTPRF-207ENST00000436724 GAL3ST2Q9H3Q3 398 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 MALRD1Q5VYJ5 2156 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 PITX3O75364 302 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms