RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TRAV20A0A0B4J274 112 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 A0A0B4J2A0 478 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 OR2A4O95047 310 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 ZNF137PP52743 207 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 NCR3LG1Q68D85 454 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 LIAT1Q6ZQX7 453 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 PDZD9Q8IXQ8 264 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 OR4P4Q8NGL7 312 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 TMEM186Q96B77 213 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 OR2A7Q96R45 310 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 LIN7CQ9NUP9 197 aaKnown RBP16.16■□□□□ 0.18
CLN3-205ENST00000359984 SHPKQ9UHJ6 478 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 BUB1B-PAK6H3BSN5 160 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 ARG1P05089 322 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 IGHV4-31P0DP07 118 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 UCP1P25874 307 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 BRWD1-AS2P59051 145 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 CATR1Q13166 79 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 DIAPH2-AS1Q14236 149 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 TMEM249Q2WGJ8 235 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 LHFPL5Q8TAF8 219 aa16.16■□□□□ 0.18
CLN3-205ENST00000359984 DBX1A6NMT0 343 aa16.15■□□□□ 0.18
CLN3-205ENST00000359984 ODF3BA8MYP8 253 aa16.15■□□□□ 0.18
CLN3-205ENST00000359984 GIPP09681 153 aaPredicted RBP16.15■□□□□ 0.18
CLN3-205ENST00000359984 ZNF585BQ52M93 769 aa16.15■□□□□ 0.18
CLN3-205ENST00000359984 OR2B11Q5JQS5 317 aa16.15■□□□□ 0.18
CLN3-205ENST00000359984 LHX4Q969G2 390 aa16.15■□□□□ 0.18
CLN3-205ENST00000359984 A0A1W2PRD5 423 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 A0A1W2PRF3 423 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 A0A1W2PRM7 423 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 B3GALNT1O75752 331 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 CT45A6P0DMU7 189 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 CT45A5P0DMU8 189 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 CT45A7P0DMV0 189 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 IL3RAP26951 378 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 REG1BP48304 166 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 LDLRAD2Q5SZI1 272 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 FAM71F2Q6NXP2 309 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 LRTM2Q8N967 370 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 ZNF383Q8NA42 475 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 ITGB1BP2Q9UKP3 347 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 HSPB11Q9Y547 144 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 CR1P17927 2039 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 CDS2O95674 445 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 THBS3P49746 956 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 LGI3Q8N145 548 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 CIARTQ8N365 385 aaPredicted RBP16.14■□□□□ 0.17
CLN3-205ENST00000359984 DDB2Q92466 427 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 TMEM56Q96MV1 263 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 MRPL20Q9BYC9 149 aaKnown RBP16.14■□□□□ 0.17
CLN3-205ENST00000359984 AMMECR1Q9Y4X0 333 aaPredicted RBP16.14■□□□□ 0.17
CLN3-205ENST00000359984 AUP1Q9Y679 476 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 TMEM56-RWDD3S4R434 201 aa16.14■□□□□ 0.17
CLN3-205ENST00000359984 LY6LH3BQJ8 138 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 GOSR2O14653 212 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 RAMP3O60896 148 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 TGFAP01135 160 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 SERPINE2P07093 398 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 GATA3P23771 443 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 UBE2E1P51965 193 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 SPAG16Q8N0X2 631 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 OR2T35Q8NGX2 323 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 ADTRPQ96IZ2 230 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 C18orf12Q96KH6 178 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 C7orf69Q9H7B7 122 aa16.13■□□□□ 0.17
CLN3-205ENST00000359984 CCSO14618 274 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 ADAP1O75689 374 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 SIX6O95475 246 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 HTR1DP28221 377 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 SRPXP78539 464 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 TMEM268Q5VZI3 342 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 SELENOHQ8IZQ5 122 aaKnown RBP16.12■□□□□ 0.17
CLN3-205ENST00000359984 TCTEX1D1Q8N7M0 179 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 ITPR3Q14573 2671 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 IGKV1-39P01597 117 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 IGKV1D-39P04432 117 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 HOXB5P09067 269 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 RAP2BP61225 183 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 LYZL2Q7Z4W2 148 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 TGIF2LXQ8IUE1 241 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 ZNF695Q8IW36 515 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 WDR89Q96FK6 387 aaPredicted RBP16.12■□□□□ 0.17
CLN3-205ENST00000359984 NABP2Q9BQ15 211 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 RAB18Q9NP72 206 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 FAM212BQ9NTI7 297 aaPredicted RBP16.12■□□□□ 0.17
CLN3-205ENST00000359984 DPM3Q9P2X0 92 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 PRELID3BQ9Y3B1 194 aa16.12■□□□□ 0.17
CLN3-205ENST00000359984 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.11■□□□□ 0.177e-9■■□□□ 13.5
CLN3-205ENST00000359984 CENPVL3A0A0U1RRI6 287 aa16.11■□□□□ 0.17
CLN3-205ENST00000359984 FCGR3BO75015 233 aa16.11■□□□□ 0.17
CLN3-205ENST00000359984 HLA-GP17693 338 aa16.11■□□□□ 0.17
CLN3-205ENST00000359984 LPAR6P43657 344 aa16.11■□□□□ 0.17
CLN3-205ENST00000359984 LHFPL4Q7Z7J7 247 aa16.11■□□□□ 0.17
CLN3-205ENST00000359984 CHIAQ9BZP6 476 aa16.11■□□□□ 0.17
CLN3-205ENST00000359984 CREBBPQ92793 2442 aa16.11■□□□□ 0.17
CLN3-205ENST00000359984 H2BFSP57053 126 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 ZNF816Q0VGE8 651 aaPredicted RBP16.1■□□□□ 0.17
CLN3-205ENST00000359984 NDUFA5Q16718 116 aa16.1■□□□□ 0.17
CLN3-205ENST00000359984 LGALSLQ3ZCW2 172 aaPredicted RBP16.1■□□□□ 0.17
CLN3-205ENST00000359984 TPTE2P1Q5T6R2 138 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms