RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 HTR2CP28335 458 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 MECP2P51608 486 aaKnown RBP12.54□□□□□ -0.4
CLN3-255ENST00000637100 ST3GAL4Q11206 333 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 HAGHQ16775 308 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 LINC00322Q6ZN03 302 aaPredicted RBP12.54□□□□□ -0.4
CLN3-255ENST00000637100 MOB1BQ7L9L4 216 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 C6orf201Q7Z4U5 140 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 SGPP2Q8IWX5 399 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 ZNF555Q8NEP9 628 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 FAM46BQ96A09 425 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 NEDD4LQ96PU5 975 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 SPATA25Q9BR10 227 aa12.54□□□□□ -0.4
CLN3-255ENST00000637100 FAM103A1Q9BTL3 118 aaKnown RBP12.54□□□□□ -0.4
CLN3-255ENST00000637100 RIMS4Q9H426 269 aaPredicted RBP12.54□□□□□ -0.4
CLN3-255ENST00000637100 TMEM14DPA8MWL7 114 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 SLC22A1O15245 554 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 GSTP1P09211 210 aaKnown RBP12.53□□□□□ -0.4
CLN3-255ENST00000637100 CELP19835 753 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 MAPK3P27361 379 aaPredicted RBP12.53□□□□□ -0.4
CLN3-255ENST00000637100 TPPP2P59282 170 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 UNC119Q13432 240 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 LAIR2Q6ISS4 152 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 GLDNQ6ZMI3 551 aaPredicted RBP12.53□□□□□ -0.4
CLN3-255ENST00000637100 LRRTM1Q86UE6 522 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 FAM89BQ8N5H3 189 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 PHYHIPQ92561 330 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 ABHD14BQ96IU4 210 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 MS4A10Q96PG2 267 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 C11orf54Q9H0W9 315 aaPredicted RBP12.53□□□□□ -0.4
CLN3-255ENST00000637100 PLCXD1Q9NUJ7 323 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 METTL1Q9UBP6 276 aaKnown RBP12.53□□□□□ -0.4
CLN3-255ENST00000637100 A3GALT2U3KPV4 340 aa12.53□□□□□ -0.4
CLN3-255ENST00000637100 PLECQ15149 4684 aaKnown RBP12.53□□□□□ -0.4
CLN3-255ENST00000637100 FOXI3A8MTJ6 420 aaPredicted RBP12.52□□□□□ -0.41
CLN3-255ENST00000637100 CA2P00918 260 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 TRGV3P03979 118 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 IGKV1-16P04430 117 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 CRYGBP07316 175 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 CD40LGP29965 261 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 PLGLAQ15195 96 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 TTC23Q5W5X9 447 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 OR10K2Q6IF99 312 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 HAPLN4Q86UW8 402 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 ANKRD13BQ86YJ7 626 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 ZNF383Q8NA42 475 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 POC5Q8NA72 575 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 KCNG3Q8TAE7 436 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 IL1F10Q8WWZ1 152 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 EDARADDQ8WWZ3 215 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 TMEM68Q96MH6 324 aa12.52□□□□□ -0.41
CLN3-255ENST00000637100 TSNAXQ99598 290 aaKnown RBP12.52□□□□□ -0.41
CLN3-255ENST00000637100 A0A0A6YYD4 124 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 A0A0G2JLM5 398 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 H0Y980 276 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 IGLV2-23P01705 113 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 WNT4P56705 351 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 ZNF343Q6P1L6 599 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 PDPNQ86YL7 162 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 NANOGP1Q8N7R0 232 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 OR9G4Q8NGQ1 327 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 FBLIM1Q8WUP2 373 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 NICN1Q9BSH3 213 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 TMEM59Q9BXS4 323 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 FKBP14Q9NWM8 211 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 PSORS1C1Q9UIG5 152 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 HSF4Q9ULV5 492 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 MGAT4AQ9UM21 535 aa12.51□□□□□ -0.41
CLN3-255ENST00000637100 H7C2Y5 167 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 CSN3P07498 182 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 ZBTB25P24278 435 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 FXYD3Q14802 87 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 SETD9Q8NE22 299 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 CLCC1Q96S66 551 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 LPAR5Q9H1C0 372 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 OR1A1Q9P1Q5 309 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 TNCP24821 2201 aa12.5□□□□□ -0.41
CLN3-255ENST00000637100 BPNT1O95861 308 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 CEACAM6P40199 344 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 LGALS7P47929 136 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 LINC00205P59089 165 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 HLA-DRB3P79483 266 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 INSL4Q14641 139 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 MRGPRG-AS1Q2M3A8 158 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 ACSM3Q53FZ2 586 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 RNLSQ5VYX0 342 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 GLT8D1Q68CQ7 371 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 ADAMTSL5Q6ZMM2 481 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 MS4A15Q8N5U1 240 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.49□□□□□ -0.41
CLN3-255ENST00000637100 ABHD5Q8WTS1 349 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 TINAGL1Q9GZM7 467 aaPredicted RBP12.49□□□□□ -0.41
CLN3-255ENST00000637100 Q9N2K0 584 aa12.49□□□□□ -0.41
CLN3-255ENST00000637100 IGKV1-6A0A0C4DH72 117 aa12.48□□□□□ -0.41
CLN3-255ENST00000637100 PNMA8CA0A1B0GUJ8 204 aa12.48□□□□□ -0.41
CLN3-255ENST00000637100 ARSBP15848 533 aa12.48□□□□□ -0.41
CLN3-255ENST00000637100 CPEP16870 476 aa12.48□□□□□ -0.41
CLN3-255ENST00000637100 AADACP22760 399 aa12.48□□□□□ -0.41
CLN3-255ENST00000637100 TMEM50BP56557 158 aa12.48□□□□□ -0.41
CLN3-255ENST00000637100 RPS16P62249 146 aaKnown RBP12.48□□□□□ -0.41
CLN3-255ENST00000637100 Q8N402 240 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms