RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 DEC1Q9P2X7 70 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 TRBV5-5A0A0J9YX44 114 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 C22orf46C9J442 243 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 RPL34P49207 117 aaKnown RBP4.32□□□□□ -1.72
VPS13D-213ENST00000613099 EDDM3BP56851 147 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 IGFBP7Q16270 282 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 APOBEC3DQ96AK3 386 aaPredicted RBP4.32□□□□□ -1.72
VPS13D-213ENST00000613099 CTHRC1Q96CG8 243 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 SIGLEC12Q96PQ1 595 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 LYRM4Q9HD34 91 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 MRM2Q9UI43 246 aaKnown RBP4.32□□□□□ -1.72
VPS13D-213ENST00000613099 TRAV8-4A0A0B4J246 113 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ABHD17CQ6PCB6 329 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF595Q8IYB9 648 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ADOQ96SZ5 270 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 A0A1W2PR48 441 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 SYNGR2O43760 224 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ADCYAP1P18509 176 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 PPP1CCP36873 323 aaKnown RBP4.32□□□□□ -1.72
VPS13D-213ENST00000613099 KCNMB1Q16558 191 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 RHBDD2Q6NTF9 364 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 SLC48A1Q6P1K1 146 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 C22orf39Q6P5X5 142 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 LYZL2Q7Z4W2 148 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 SS18L2Q9UHA2 77 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 A0A1W2PQM1 296 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 KIR3DS1Q14943 382 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 MED29Q9NX70 200 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 CRYBB3P26998 211 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 PSMB5P28074 263 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 LYSMD4Q5XG99 296 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 SPRED2Q7Z698 418 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 MRGPREQ86SM8 312 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 PLXDC1Q8IUK5 500 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 GLIS2Q9BZE0 524 aaPredicted RBP4.32□□□□□ -1.72
VPS13D-213ENST00000613099 GOLGA2P5Q9HBQ8 144 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 IL18BPO95998 194 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF77Q15935 545 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 SLC25A40Q8TBP6 338 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 GNRHR2Q96P88 292 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 C5orf66Q9H5L9 145 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF665Q9H7R5 613 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 TMEM56-RWDD3S4R434 201 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 MRPL58Q14197 206 aaKnown RBP4.32□□□□□ -1.72
VPS13D-213ENST00000613099 OR14C36Q8NHC7 312 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF418Q8TF45 676 aaPredicted RBP4.32□□□□□ -1.72
VPS13D-213ENST00000613099 SLC25A2Q9BXI2 301 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 TMEM222Q9H0R3 208 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 GNG12Q9UBI6 72 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 DHHO43323 396 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ANOS1P23352 680 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 TMEM211Q6ICI0 200 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 DOLPP1Q86YN1 238 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 THYN1Q9P016 225 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 FAM231BA6NCW3 169 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 SPINT2O43291 252 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 NXPH3O95157 252 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 REG1AP05451 166 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 UCP1P25874 307 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 TM4SF1P30408 202 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 DACT2Q5SW24 774 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 TMEM252Q8N6L7 170 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 ABHD5Q8WTS1 349 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 RAX2Q96IS3 184 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 BARX1Q9HBU1 254 aaPredicted RBP4.32□□□□□ -1.72
VPS13D-213ENST00000613099 PLXND1Q9Y4D7 1925 aa4.32□□□□□ -1.72
VPS13D-213ENST00000613099 KIR2DL5BA0A0G2JN68 375 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 KIR2DL5BA0A0G2JPC4 375 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF750Q32MQ0 723 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 C1orf140Q5VVS0 124 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 KIR2DL5AQ8N109 375 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 GVQW1Q8N7I0 195 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 SCAMP4Q969E2 229 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 RBM24Q9BX46 236 aaKnown RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 LINC00597Q9H2U6 94 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 UBE2ZQ9H832 354 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 PLXNB3Q9ULL4 1909 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 CXCL1P09341 107 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 NOXO1Q8NFA2 376 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 SLC25A28Q96A46 364 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 NXF5Q9H1B4 397 aaKnown RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 TRBV5-7A0A0A0MS05 114 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 C9orf40Q8IXQ3 194 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 F11RQ9Y624 299 aaKnown RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 J3KT08 172 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 PTGESO14684 152 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 GNG3P63215 75 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 LY6G6FQ5SQ64 297 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 FBXL14Q8N1E6 418 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 STPG4Q8N801 248 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 MRGPRX3Q96LB0 322 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 KLK13Q9UKR3 277 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 COLQQ9Y215 455 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-213ENST00000613099 C20orf141Q9NUB4 165 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 FRRS1LQ9P0K9 344 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 G3V4G9 280 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 COX7A2P2O60397 106 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 C2orf68Q2NKX9 166 aa4.31□□□□□ -1.72
VPS13D-213ENST00000613099 TCTEX1D4Q5JR98 221 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms