RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ATP6V1FQ16864 119 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 FAM201AQ5SY85 155 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 PITX3O75364 302 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 CD59P13987 128 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 FAM78BQ5VT40 261 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 GGNQ86UU5 652 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 ZNRF1Q8ND25 227 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 TMEM230Q96A57 120 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 RHOVQ96L33 236 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 MS4A5Q9H3V2 200 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 ODAMA1E959 279 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 CECR9P0C854 216 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 ORM2P19652 201 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 NCMAPQ5T1S8 102 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 NEIL1Q96FI4 390 aaPredicted RBP13.88□□□□□ -0.19
CUX1-213ENST00000549414 CYB5R3P00387 301 aaPredicted RBP13.88□□□□□ -0.19
CUX1-213ENST00000549414 PSG7Q13046 419 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 ZNF880Q6PDB4 577 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 BLNKQ8WV28 456 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 WBP1Q96G27 269 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 CTDSP1Q9GZU7 261 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 SEMA5BQ9P283 1151 aa13.88□□□□□ -0.19
CUX1-213ENST00000549414 PLXNB3Q9ULL4 1909 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 MDKP21741 143 aaPredicted RBP13.87□□□□□ -0.19
CUX1-213ENST00000549414 ZNF273Q14593 569 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 TNXAQ16473 311 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 BSXQ3C1V8 233 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 BSCL2Q96G97 398 aaPredicted RBP13.87□□□□□ -0.19
CUX1-213ENST00000549414 ABHD14AQ9BUJ0 271 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 GAR1Q9NY12 217 aaKnown RBP13.87□□□□□ -0.19
CUX1-213ENST00000549414 IGHV3-72A0A0B4J1Y9 119 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 H0YL77 283 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 TFF1P04155 84 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 DRAM1Q8N682 238 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 OR5B3Q8NH48 314 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 NABP1Q96AH0 204 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 DCTN5Q9BTE1 182 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 CACFD1Q9UGQ2 172 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 IGKV1-12A0A0C4DH73 117 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 DUXBA0A1W2PPF3 345 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 C11orf94C9JXX5 98 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 IGKV1D-12P01611 117 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 FABP4P15090 132 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 GALR1P47211 349 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 RHOBP62745 196 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 ZNF385CQ66K41 422 aaPredicted RBP13.87□□□□□ -0.19
CUX1-213ENST00000549414 VKORC1L1Q8N0U8 176 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 BMPERQ8N8U9 685 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 ZBTB34Q8NCN2 500 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 OR10D4PQ8NGN7 298 aa13.87□□□□□ -0.19
CUX1-213ENST00000549414 IGHV3-21A0A0B4J1V1 117 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 A1L4Q6 167 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 SPP1P10451 314 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 NPY1RP25929 384 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 SAXO1Q8IYX7 474 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 ADTRPQ96IZ2 230 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 FAM103A1Q9BTL3 118 aaKnown RBP13.86□□□□□ -0.19
CUX1-213ENST00000549414 SLC25A10Q9UBX3 287 aaPredicted RBP13.86□□□□□ -0.19
CUX1-213ENST00000549414 FOXD3Q9UJU5 478 aaPredicted RBP13.86□□□□□ -0.19
CUX1-213ENST00000549414 FAM27E3Q08E93 113 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 SLC16A13Q7RTY0 426 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 TGIF2LYQ8IUE0 185 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 TGIF2LXQ8IUE1 241 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 OR4P4Q8NGL7 312 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 BCL2L2Q92843 193 aaPredicted RBP13.86□□□□□ -0.19
CUX1-213ENST00000549414 OR4C12Q96R67 309 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 ZGRF1Q86YA3 2104 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 SMPD2O60906 423 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 S1PR2O95136 353 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 IGHV1-2P23083 117 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 WDYHV1Q96HA8 205 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 GINS3Q9BRX5 216 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 H0YIZ8 118 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 CCL1P22362 96 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 SRP14P37108 136 aaKnown RBP13.86□□□□□ -0.19
CUX1-213ENST00000549414 KRTCAP3Q53RY4 240 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 LHFPL5Q8TAF8 219 aa13.86□□□□□ -0.19
CUX1-213ENST00000549414 S100A8P05109 93 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 C5orf24Q7Z6I8 188 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 TMEM171Q8WVE6 324 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 SH2D2AQ9NP31 389 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 PHOX2AO14813 284 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 B2MP61769 119 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 C9orf106Q8NAJ2 232 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 RARRES2Q99969 163 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 VAX2Q9UIW0 290 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 IGF2RP11717 2491 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 J3QR06 171 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 KIR2DS2P43631 304 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 MRGPRGQ86SM5 289 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 OR10A7Q8NGE5 316 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 MARS2Q96GW9 593 aaKnown RBP13.85□□□□□ -0.19
CUX1-213ENST00000549414 RBKSQ9H477 322 aa13.85□□□□□ -0.19
CUX1-213ENST00000549414 LYRM2Q9NU23 88 aaPredicted RBP13.85□□□□□ -0.19
CUX1-213ENST00000549414 PPIAL4EA0A075B759 164 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 PPIAL4DF5H284 164 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 ZG16O60844 167 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 PPIAL4FP0DN26 164 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 KDF1Q8NAX2 398 aaPredicted RBP13.84□□□□□ -0.19
CUX1-213ENST00000549414 ZNF581Q9P0T4 197 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 128.1 ms