RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ZNF488Q96MN9 340 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 DIRC2Q96SL1 478 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 SRD5A3Q9H8P0 318 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 TINAGQ9UJW2 476 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 EXPH5Q8NEV8 1989 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 IGLV1-36A0A0B4J1U3 117 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 A0A1B0GTI1 187 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 C11orf94C9JXX5 98 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 SYNGR2O43760 224 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 GAPDHP04406 335 aaKnown RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 THBS4P35443 961 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 WNT5AP41221 380 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 OR3A1P47881 315 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 PRDX4Q13162 271 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 SEM1Q6ZVN7 128 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 PPP1R32Q7Z5V6 425 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ASB10Q8WXI3 467 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 GPR35Q9HC97 309 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 Q9N2K0 584 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 RPRMQ9NS64 109 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 NAT8Q9UHE5 227 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 VAX2Q9UIW0 290 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ATMQ13315 3056 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 LOC102723971A0A1B0GUV8 181 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 DUXBA0A1W2PPF3 345 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 PGPEP1LA6NFU8 196 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 FAM166BA8MTA8 275 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF735P0CB33 412 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 CA6P23280 308 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 OTX1P32242 354 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 HGFACQ04756 655 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 PNRC1Q12796 327 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ISXQ2M1V0 245 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 VAX1Q5SQQ9 334 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 C1orf100Q5SVJ3 147 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 RNASEKQ6P5S7 137 aaKnown RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 NUFIP2Q7Z417 695 aaKnown RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 RPS19BP1Q86WX3 136 aaKnown RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 DEFB108BQ8NET1 73 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 OR5AU1Q8NGC0 362 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 SMIM8Q96KF7 97 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 TECTBQ96PL2 329 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 HIPK2Q9H2X6 1198 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 RBKSQ9H477 322 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF552Q9H707 407 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 CHODLQ9H9P2 273 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 DKK4Q9UBT3 224 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ABCA4P78363 2273 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 GJE1A6NN92 205 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 BCAT2O15382 392 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-203ENST00000547825 NDUFB4O95168 129 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 CSN3P07498 182 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 SCTP09683 121 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 BCL2P10415 239 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 PSG2P11465 335 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 FCER1GP30273 86 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 CEACAM6P40199 344 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 MDH2P40926 338 aaKnown RBP4.69□□□□□ -1.66
LIMA1-203ENST00000547825 GNG10P50151 68 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 CNN1P51911 297 aaKnown RBP4.69□□□□□ -1.66
LIMA1-203ENST00000547825 HERPUD1Q15011 391 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 BTNL3Q6UXE8 466 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 GCNT2Q8N0V5 402 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 NEIL1Q96FI4 390 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-203ENST00000547825 TP53RKQ96S44 253 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 RTBDNQ9BSG5 229 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-203ENST00000547825 LRRC61Q9BV99 259 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 FOXJ2Q9P0K8 574 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 NAGKQ9UJ70 344 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 TIMM10BQ9Y5J6 103 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 PIGBOS1A0A0B4J2F0 54 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 SNURFLB1AK76 121 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 FGF16O43320 207 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 FCGR3AP08637 254 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 COL10A1Q03692 680 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 FUT7Q11130 342 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 FHL3Q13643 280 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 CEBPEQ15744 281 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 Q56UQ5 140 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 FHL5Q5TD97 284 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 OR1L3Q8NH93 324 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 OR1F12Q8NHA8 337 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 FLVCR1-AS1Q8TAF5 88 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 C14orf144Q96I85 54 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF385AQ96PM9 386 aaKnown RBP4.69□□□□□ -1.66
LIMA1-203ENST00000547825 MESP1Q9BRJ9 268 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 G6PC2Q9NQR9 355 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 SPTY2D1-AS1A0A0U1RR47 76 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 BMPR1BO00238 502 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 CYB5R3P00387 301 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-203ENST00000547825 OR10J4P0C629 311 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 OR10J1P30954 320 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 GLIPR1P48060 266 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 IL24Q13007 206 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 ABHD17BQ5VST6 288 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 C5orf24Q7Z6I8 188 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 C9orf40Q8IXQ3 194 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 ABHD5Q8WTS1 349 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM171Q8WVE6 324 aa4.69□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM230Q96A57 120 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms