RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 RD3LP0DJH9 198 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 ZNF345Q14585 488 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 hCG_38984A0A1B0GV85 526 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 TFPI2P48307 235 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 PMS2P11Q13670 270 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 RRN3P1Q2M238 152 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 C16orf92Q96LL3 132 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 AMELYQ99218 206 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 KLK13Q9UKR3 277 aa13.97□□□□□ -0.17
PCDHA3-201ENST00000522353 PRSS1P07477 247 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 MFAP4P55083 255 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 ERVS71-1P61550 626 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 ZNF79Q15937 498 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 SNAI3Q3KNW1 292 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 IGSF11Q5DX21 431 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 DDB2Q92466 427 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 RBM14Q96PK6 669 aaKnown RBP13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 TRAV30A0A087WSZ9 112 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 ZNF253O75346 499 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 G0S2P27469 103 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 FAM27E3Q08E93 113 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 C1orf100Q5SVJ3 147 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 DEDDO75618 318 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 MGPP08493 103 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 RFPL3SP0C7P2 107 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 MMP9P14780 707 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 SNRPEP62304 92 aaKnown RBP13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 LY6EQ16553 131 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 C9orf62Q8N4C0 152 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 OR11H7Q8NGC8 314 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 HSF4Q9ULV5 492 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 AUP1Q9Y679 476 aa13.96□□□□□ -0.17
PCDHA3-201ENST00000522353 FAM74A7A6NL05 159 aa13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 SLC25A17O43808 307 aa13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 PAGE4O60829 102 aa13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 LYRM7Q5U5X0 104 aa13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 SPANXN1Q5VSR9 72 aa13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 CENPVQ7Z7K6 275 aaPredicted RBP13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 TMEM54Q969K7 222 aa13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 TMEM191AQ9H0A3 160 aa13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 KCNK7Q9Y2U2 307 aa13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 SIRT4Q9Y6E7 314 aaPredicted RBP13.96□□□□□ -0.18
PCDHA3-201ENST00000522353 SMAD7O15105 426 aaKnown RBP13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 IGHMP01871 453 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 PF4P02776 101 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 SCTP09683 121 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 WDR90Q96KV7 1748 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 CACNA1IQ9P0X4 2223 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 IGKV3D-11A0A0A0MRZ8 115 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 WNT5AP41221 380 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 PRSS53Q2L4Q9 553 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 TMEM255AQ5JRV8 349 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 GSX1Q9H4S2 264 aaPredicted RBP13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 RAXQ9Y2V3 346 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 ELOA3CA0A087WX78 387 aaPredicted RBP13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 PITX3O75364 302 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 OR2A4O95047 310 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 CFDP00746 253 aaPredicted RBP13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 HERVK_113P61574 105 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 OR4C13Q8NGP0 309 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 OR2A7Q96R45 310 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 FAM206AQ9NX38 181 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 TAF1LQ8IZX4 1826 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 IGKV1D-42A0A075B6H8 117 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 TCL1AP56279 114 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 SERF2P84101 59 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 HCP5Q6MZN7 132 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 OR52M1Q8NGK5 317 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 TMEM56-RWDD3S4R434 201 aa13.95□□□□□ -0.18
PCDHA3-201ENST00000522353 SRSF10O75494 262 aaKnown RBP13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 OR10J1P30954 320 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 ACSF3Q4G176 576 aaPredicted RBP13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 NRXN2Q9P2S2 1712 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 LOC390937A0A1W2PQ73 354 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 MELTFP08582 738 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 HIST3H3Q16695 136 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 IMMP1LQ96LU5 166 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 SLC25A33Q9BSK2 321 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 ZNHIT1O43257 154 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 HLA-DRB5Q30154 266 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 MRPL14Q6P1L8 145 aaKnown RBP13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 RFLNBQ8N5W9 214 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 POM121Q96HA1 1249 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 ZNFX1Q9P2E3 1918 aaKnown RBP13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 A0A1W2PP11 408 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 C7orf66A4D0T2 115 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 M0R2Z0 102 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 CXorf66Q5JRM2 361 aaPredicted RBP13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 VWA1Q6PCB0 445 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 BPIFA4PQ86YQ2 179 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 PNKDQ8N490 385 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 TMEM106BQ9NUM4 274 aa13.94□□□□□ -0.18
PCDHA3-201ENST00000522353 C1QCP02747 245 aa13.93□□□□□ -0.18
PCDHA3-201ENST00000522353 ATP6V0CP27449 155 aa13.93□□□□□ -0.18
PCDHA3-201ENST00000522353 CEBPDP49716 269 aaPredicted RBP13.93□□□□□ -0.18
PCDHA3-201ENST00000522353 ELOBQ15370 118 aa13.93□□□□□ -0.18
PCDHA3-201ENST00000522353 C1QTNF12Q5T7M4 302 aa13.93□□□□□ -0.18
PCDHA3-201ENST00000522353 RAX2Q96IS3 184 aa13.93□□□□□ -0.18
PCDHA3-201ENST00000522353 PPP1R3EQ9H7J1 279 aa13.93□□□□□ -0.18
PCDHA3-201ENST00000522353 CSN3P07498 182 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms