RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TMEM54Q969K7 222 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 RAB39BQ96DA2 213 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BNQ99877 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HIST1H2BMQ99879 126 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 DERL1Q9BUN8 251 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 ELOVL3Q9HB03 270 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 BET1LQ9NYM9 111 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 PSORS1C1Q9UIG5 152 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 KLHDC2Q9Y2U9 406 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 TRBV7-9A0A0J9YWB2 115 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 HSPB6O14558 160 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 SYNGR3O43761 229 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 GIPP09681 153 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 OSMP13725 252 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF121P58317 390 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF679Q8IYX0 411 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 NECAP1Q8NC96 275 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 OR4C15Q8NGM1 316 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 VN1R17PQ8TDU5 208 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 H1FXQ92522 213 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 EAF1Q96JC9 268 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 MS4A10Q96PG2 267 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 CGGBP1Q9UFW8 167 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 A0A1B0GU03 582 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 TMEM269A0A1B0GVZ9 245 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 FAM230AA0A1W2PPH8 454 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 B5MCH6 92 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 M0QXV9 152 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 IGKV3-15P01624 115 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 CTSDP07339 412 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF92Q03936 586 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 LTC4SQ16873 150 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 OR2G6Q5TZ20 316 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 FAM27BQ5VT28 67 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 LRRC75AQ8NAA5 344 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 SLC25A46Q96AG3 418 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 NABP1Q96AH0 204 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 TEAD3Q99594 435 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 PLEKHA1Q9HB21 404 aa6.66□□□□□ -1.34
LIMCH1-219ENST00000514096 P2RY10O00398 339 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 PPBPP02775 128 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 MGMTP16455 207 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 GSTM3P21266 225 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 PPOXP50336 477 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 RPS25P62851 125 aaKnown RBP6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF266Q14584 549 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 SSX1Q16384 188 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 DPPA3Q6W0C5 159 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 OR51E1Q8TCB6 317 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 RAB40AQ8WXH6 277 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 MRPL24Q96A35 216 aaKnown RBP6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 ZNF488Q96MN9 340 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 LINC00470Q9BZP3 86 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 MS4A5Q9H3V2 200 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 HAO2Q9NYQ3 351 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 RCC2Q9P258 522 aaKnown RBP6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 UFC1Q9Y3C8 167 aa6.65□□□□□ -1.34
LIMCH1-219ENST00000514096 IFNL4K9M1U5 179 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 SEMG1P04279 462 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 FAHP16930 419 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 GLRXP35754 106 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 BAXQ07812 192 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 ZP4Q12836 540 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 ACSM3Q53FZ2 586 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 OR1J2Q8NGS2 313 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 SPTSSAQ969W0 71 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 OR5B12Q96R08 314 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 RFNGQ9Y644 331 aa6.65□□□□□ -1.35
LIMCH1-219ENST00000514096 TPT1P13693 172 aaKnown RBP6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 NTF3P20783 257 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 EFNA4P52798 201 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 RPS23P62266 143 aaKnown RBP6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 INSL4Q14641 139 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 TMEM249Q2WGJ8 235 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 ZNF66Q6ZN08 573 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 STPG4Q8N801 248 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 SUMF2Q8NBJ7 301 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 ZC2HC1AQ96GY0 325 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 SIGMAR1Q99720 223 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 ISG20L2Q9H9L3 353 aaKnown RBP6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 PGPEP1Q9NXJ5 209 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 IGHV1-69-2A0A0G2JMI3 117 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 C7orf66A4D0T2 115 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 IFNA5P01569 189 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 IGHV3-13P01766 116 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 IGHV3-7P01780 117 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 ZNF735P0CB33 412 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 FOLR2P14207 255 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 LOXP28300 417 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 NOTCH1P46531 2555 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 PDLIM4P50479 330 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 GNB2P62879 340 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 DHRS11Q6UWP2 260 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 FGFRL1Q8N441 504 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 OR5R1Q8NH85 324 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 BOD1Q96IK1 185 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 GINS3Q9BRX5 216 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 FAM103A1Q9BTL3 118 aaKnown RBP6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 OR51I2Q9H344 312 aa6.64□□□□□ -1.35
LIMCH1-219ENST00000514096 AK3Q9UIJ7 227 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms