RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RANBP1P43487 201 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 GPR12P47775 334 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 RPL23AP62750 156 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 RPS25P62851 125 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 MLLT11Q13015 90 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 UNC119Q13432 240 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 TPBGQ13641 420 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 GNMTQ14749 295 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 HMGN3Q15651 99 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 LY6G6FQ5SQ64 297 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 OR10K2Q6IF99 312 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 MOB1BQ7L9L4 216 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 PRSS48Q7RTY5 328 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 OR2W3Q7Z3T1 314 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 C6orf201Q7Z4U5 140 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 STPG2Q8N412 459 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 OR52L2PQ8NGH6 319 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 YPEL2Q96QA6 119 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 S1PR3Q99500 378 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 SULT4A1Q9BR01 284 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 NICN1Q9BSH3 213 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 URM1Q9BTM9 101 aaKnown RBP5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 FAAP24Q9BTP7 215 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 GON7Q9BXV9 100 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 PLGRKTQ9HBL7 147 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 CHMP1AQ9HD42 196 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 ZFP57Q9NU63 452 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 PLEKHJ1Q9NW61 149 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 STEAP1Q9UHE8 339 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 LINC00527Q9UJ94 153 aa5.35□□□□□ -1.55
CCDC88A-213ENST00000476903 ZNF736B4DX44 427 aaPredicted RBP5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 SLC17A2O00624 439 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 NAPSAO96009 420 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 VDAC1P21796 283 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 BLVRBP30043 206 aaPredicted RBP5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 PPP1CCP36873 323 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 F2RL1P55085 397 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 QRFPP83859 136 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 P2RY14Q15391 338 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 RAB11BQ15907 218 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 FAM71F2Q6NXP2 309 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 TEX38Q6PEX7 206 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 IZUMO2Q6UXV1 221 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 TMEM91Q6ZNR0 172 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 ZNF367Q7RTV3 350 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 FAM71E2Q8N5Q1 922 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 KLHL30-AS1Q8NEE0 82 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 OR2AK2Q8NG84 335 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 SETD6Q8TBK2 473 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 MRAPQ8TCY5 172 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 IL1F10Q8WWZ1 152 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 CYYR1Q96J86 154 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 C16orf92Q96LL3 132 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 CNBD2Q96M20 576 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 MGLLQ99685 303 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 GPR61Q9BZJ8 451 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 RIMS4Q9H426 269 aaPredicted RBP5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 KCNK15Q9H427 330 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 ACOT13Q9NPJ3 140 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 PLSCR3Q9NRY6 295 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 MGAT4AQ9UM21 535 aa5.34□□□□□ -1.55
CCDC88A-213ENST00000476903 SAA2-SAA4A0A096LPE2 208 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 A0A0A6YYD4 124 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 TRBV6-6A0A0A6YYG2 114 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 LINC01548A6NM66 108 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 RAB29O14966 203 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 SOCS1O15524 211 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 SAA2P0DJI9 122 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 OR5H8P0DN80 308 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 S100A5P33763 92 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 SOX6P35712 828 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 MYCNOSP40205 109 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 MAP2K4P45985 399 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 THBS3P49746 956 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 PSMD7P51665 324 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 FABP5Q01469 135 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 MMDQ15546 238 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 TBCEQ15813 527 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 PNLIPRP3Q17RR3 467 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 CXorf66Q5JRM2 361 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF880Q6PDB4 577 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF833PQ6ZTB9 187 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 C5orf24Q7Z6I8 188 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF695Q8IW36 515 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 ODF3L1Q8IXM7 274 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 FAM89BQ8N5H3 189 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 DPF1Q92782 380 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 GFI1Q99684 422 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 HSPB9Q9BQS6 159 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF251Q9BRH9 671 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 MCRIP2Q9BUT9 160 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 MRPL20Q9BYC9 149 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 LPAR5Q9H1C0 372 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 IFI27L2Q9H2X8 130 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 C12orf4Q9NQ89 552 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 PPP1R14DQ9NXH3 145 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 PIPOXQ9P0Z9 390 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF107Q9UII5 783 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 AK3Q9UIJ7 227 aa5.33□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF580Q9UK33 172 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms