RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 AGMATQ9BSE5 352 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 PRR14LQ5THK1 2151 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 LOC400499M0QZD8 3231 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 FOLR3P41439 243 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 GCSAMLQ5JQS6 135 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 ACTL10Q5JWF8 245 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 LSM10Q969L4 123 aaKnown RBP15.58■□□□□ 0.08
CCDC3-201ENST00000378825 NOL4LQ96MY1 436 aaPredicted RBP15.58■□□□□ 0.08
CCDC3-201ENST00000378825 NTN3O00634 580 aaPredicted RBP15.57■□□□□ 0.08
CCDC3-201ENST00000378825 P04436 131 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 CELA3AP09093 270 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 GDF1P27539 372 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 G6PCP35575 357 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 CEACAM6P40199 344 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 PSMB3P49720 205 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 TCEAL6Q6IPX3 200 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 FAM58AQ8N1B3 248 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 DRAM1Q8N682 238 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 OR10G9Q8NGN4 311 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 OR10G7Q8NGN6 311 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 OR2T10Q8NGZ9 312 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 OR1L1Q8NH94 360 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 MRPL33O75394 65 aaKnown RBP15.57■□□□□ 0.08
CCDC3-201ENST00000378825 CA6P23280 308 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 UBE2G2P60604 165 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 ZNF816Q0VGE8 651 aaPredicted RBP15.57■□□□□ 0.08
CCDC3-201ENST00000378825 FAM78BQ5VT40 261 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 CENPVQ7Z7K6 275 aaPredicted RBP15.57■□□□□ 0.08
CCDC3-201ENST00000378825 PINX1Q96BK5 328 aaKnown RBP15.57■□□□□ 0.08
CCDC3-201ENST00000378825 IER2Q9BTL4 223 aa15.57■□□□□ 0.08
CCDC3-201ENST00000378825 COLQQ9Y215 455 aaPredicted RBP15.57■□□□□ 0.08
CCDC3-201ENST00000378825 TNRC6AQ8NDV7 1962 aaKnown RBP15.56■□□□□ 0.08
CCDC3-201ENST00000378825 KNTC1P50748 2209 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 PDLIM4P50479 330 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 FFAR4Q5NUL3 377 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 TCF23Q7RTU1 214 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 TUSC5Q8IXB3 177 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 ZNF114Q8NC26 417 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 OR6C3Q9NZP0 311 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 SCGB1D1O95968 90 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 TGIF2LYQ8IUE0 185 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 SAXO1Q8IYX7 474 aa15.56■□□□□ 0.08
CCDC3-201ENST00000378825 ZNF808Q8N4W9 903 aaPredicted RBP15.56■□□□□ 0.08
CCDC3-201ENST00000378825 TMEM265A0A087WTH1 108 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 GCGP01275 180 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 IL3RAP26951 378 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 CEBPDP49716 269 aaPredicted RBP15.55■□□□□ 0.08
CCDC3-201ENST00000378825 RPL30P62888 115 aaKnown RBP15.55■□□□□ 0.08
CCDC3-201ENST00000378825 TNFRSF9Q07011 255 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 TMEM14EPQ6UXP3 125 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 TMEM204Q9BSN7 226 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.55■□□□□ 0.08
CCDC3-201ENST00000378825 DEGS1O15121 323 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 LAMTOR5O43504 91 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 DNPH1O43598 174 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 MPLP40238 635 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 C5orf30Q96GV9 206 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 TRAPPC2LQ9UL33 140 aa15.55■□□□□ 0.08
CCDC3-201ENST00000378825 POLR3KQ9Y2Y1 108 aaPredicted RBP15.55■□□□□ 0.08
CCDC3-201ENST00000378825 ZG16O60844 167 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 TFF1P04155 84 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 C1QTNF9P0C862 333 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 BTNL3Q6UXE8 466 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 KCNE4Q8WWG9 221 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 TMEM18Q96B42 140 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 HNF1AP20823 631 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 GCH1P30793 250 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 ATP5G3P48201 142 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 TDRG1Q3Y452 100 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 Q6P435 159 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 BEND2Q8NDZ0 799 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 OR5A2Q8NGI9 324 aa15.54■□□□□ 0.08
CCDC3-201ENST00000378825 CTXND1A0A1B0GTU2 59 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 TMEM250H0YL14 139 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 GGCTO75223 188 aaKnown RBP15.53■□□□□ 0.08
CCDC3-201ENST00000378825 TDGF1P13385 188 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 SPINK14Q6IE38 97 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 UBALD2Q8IYN6 164 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 GBGT1Q8N5D6 347 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 ACY3Q96HD9 319 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 TNRC6BQ9UPQ9 1833 aaKnown RBP15.53■□□□□ 0.08
CCDC3-201ENST00000378825 CNN1P51911 297 aaKnown RBP15.53■□□□□ 0.08
CCDC3-201ENST00000378825 C3AR1Q16581 482 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 ACSF3Q4G176 576 aaPredicted RBP15.53■□□□□ 0.08
CCDC3-201ENST00000378825 LBHQ53QV2 105 aaPredicted RBP15.53■□□□□ 0.08
CCDC3-201ENST00000378825 CST9LP1Q5W188 147 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 PPP1R32Q7Z5V6 425 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 TMEM105Q8N8V8 129 aa15.53■□□□□ 0.08
CCDC3-201ENST00000378825 APOBEC3DQ96AK3 386 aaPredicted RBP15.53■□□□□ 0.08
CCDC3-201ENST00000378825 GRIFINA4D1Z8 144 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 HOXA6P31267 233 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 WDR86Q86TI4 376 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 HES7Q9BYE0 225 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 TRAV38-1A0A0B4J264 116 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 A0A0U1RQK1 487 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 ZNF320A2RRD8 509 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 A6NNC1 897 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 C11orf94C9JXX5 98 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 OR2H2O95918 312 aa15.52■□□□□ 0.08
CCDC3-201ENST00000378825 RIMS4Q9H426 269 aaPredicted RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms