RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 COX6CP09669 75 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 FGF9P31371 208 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 POLR2GP62487 172 aaKnown RBP eCLIP3.47□□□□□ -1.85
USH2A-202ENST00000366942 PRICKLE4Q2TBC4 344 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 C6orf52Q5T4I8 152 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 RASL11AQ6T310 242 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 NDUFA11Q86Y39 141 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 SYS1Q8N2H4 156 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 CNIH3Q8TBE1 160 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 PHLDA1Q8WV24 401 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 MMP28Q9H239 520 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 Q9N2K0 584 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 PSENENQ9NZ42 101 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 ARL2-SNX15V9GYD0 113 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 FAM223BA6NKX1 122 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 F6UB75 175 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 ZNF324O75467 553 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 ALPLP05186 524 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 PTHLHP12272 177 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 NAT1P18440 290 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 FCGR2CP31995 323 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 OPRL1P41146 370 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 FMODQ06828 376 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 VWC2Q2TAL6 325 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 LRRC28Q86X40 367 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 FAM223AQ8IWN6 122 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 CTDSP1Q9GZU7 261 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 DCSTAMPQ9H295 470 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 GSX1Q9H4S2 264 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 TAF9BQ9HBM6 251 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 GPR27Q9NS67 375 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 TMEM140Q9NV12 185 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 ZNF256Q9Y2P7 627 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 ZFHX2Q9C0A1 2572 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 FADS1O60427 444 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 SHBGP04278 402 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 UBE2E1P51965 193 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 UBE2L3P68036 154 aaKnown RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 ASAH1Q13510 395 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 PHLDA2Q53GA4 152 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 OR11H1Q8NG94 326 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 OR4C5Q8NGB2 326 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 OR11H2Q8NH07 326 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 FAM3DQ96BQ1 224 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 CABLES2Q9BTV7 478 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 QTRT1Q9BXR0 403 aaKnown RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 SIGLEC8Q9NYZ4 499 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 NOTOA8MTQ0 251 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 HLA-DQA1P01909 254 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 OR5AL1P0C617 328 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PGA5P0DJD9 388 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 SLC25A6P12236 298 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PMCHP20382 165 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ZFP36P26651 326 aaKnown RBP3.46□□□□□ -1.86
USH2A-202ENST00000366942 FUT5Q11128 374 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 SAPCD1Q5SSQ6 148 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 C10orf113Q5VZT2 155 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ZDHHC22Q8N966 263 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 OR4X1Q8NH49 305 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 TAF15Q92804 592 aaKnown RBP eCLIP3.46□□□□□ -1.86
USH2A-202ENST00000366942 PEF1Q9UBV8 284 aaKnown RBP3.46□□□□□ -1.86
USH2A-202ENST00000366942 OPN4Q9UHM6 478 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 BTAF1O14981 1849 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 C2CD3Q4AC94 2353 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 IGHV3-43A0A0B4J1X8 118 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 P0DMU3 169 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM231AP0DMU4 169 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM231CP0DMU5 169 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 IGHV3-43DP0DP04 118 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 SEC11AP67812 179 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PRSS8Q16651 343 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PLPPR5Q32ZL2 321 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ZNF585BQ52M93 769 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 ASPHD2Q6ICH7 369 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 CADM3Q8N126 398 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM169BQ8N8A8 192 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 LFNGQ8NES3 379 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 OR5AN1Q8NGI8 311 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 VN1R17PQ8TDU5 208 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 GATA6Q92908 595 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 IMMP1LQ96LU5 166 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 TMEM133Q9H2Q1 129 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 PLCH1Q4KWH8 1693 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A10PA6NDY2 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A18PA6NE21 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A16PA6NEW6 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A20PA6NIJ5 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A8PA6NJQ4 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A7PA6NKC0 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A22PA8MWA6 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A12PA8MX19 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A5PA8MXJ8 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A23PA8MXZ1 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 TMPRSS11DO60235 418 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 IGHG3P01860 377 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 MT-ND4LP03901 98 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 GYPBP06028 91 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A15PP0C7V4 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A13PP0C7W8 464 aa3.46□□□□□ -1.86
USH2A-202ENST00000366942 FAM90A14PP0C7W9 464 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms