RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 AWAT2Q6E213 333 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 RPL22L1Q6P5R6 122 aaKnown RBP6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 UNQ5815/PRO19632Q6UWF5 114 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 LINC00596Q86U02 117 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 PPP1R27Q86WC6 154 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 GAPTQ8N292 157 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 NPBQ8NG41 125 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 GHSRQ92847 366 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 ABHD14BQ96IU4 210 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 RDH12Q96NR8 316 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 OR14A2Q96R54 314 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 CHCHD6Q9BRQ6 235 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 GHITMQ9H3K2 345 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 SELENOKQ9Y6D0 94 aa6.61□□□□□ -1.35
SHKBP1-220ENST00000599716 TRBV5-5A0A0J9YX44 114 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 LOC100130705A0A1B0GUX0 176 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 SNTNA6NMZ2 147 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 H0YJW9 148 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 H7C2Y5 167 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 RRHO14718 337 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 CA2P00918 260 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 IGLV1-51P01701 117 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 HSPB1P04792 205 aaKnown RBP6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 APELAP0DMC3 54 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 INSL4Q14641 139 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 Q3ZCU0 254 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 DMKNQ6E0U4 476 aaPredicted RBP6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 C6orf201Q7Z4U5 140 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 ANKRD13BQ86YJ7 626 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 OR5T1Q8NG75 326 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 GRPEL2Q8TAA5 225 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 SETD6Q8TBK2 473 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 SMIM19Q96E16 107 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 RHOVQ96L33 236 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 Q96M66 194 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 SULT4A1Q9BR01 284 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 FAAP24Q9BTP7 215 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 TMED9Q9BVK6 235 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 WFDC10AQ9H1F0 79 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 ZNF355PQ9NSJ1 428 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 MBNL3Q9NUK0 354 aaKnown RBP6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 PAK1IP1Q9NWT1 392 aaPredicted RBP6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 KCNIP1Q9NZI2 227 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 CNOT2Q9NZN8 540 aaKnown RBP6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 JPT1Q9UK76 154 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 NUBP2Q9Y5Y2 271 aa6.6□□□□□ -1.35
SHKBP1-220ENST00000599716 DNAH11Q96DT5 4516 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 ARPC1BO15143 372 aaKnown RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 OGG1O15527 345 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 HSPA12AO43301 675 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 YPEL1O60688 119 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 ZNF780AO75290 641 aaPredicted RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 RBMXL2O75526 392 aaKnown RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 CIB2O75838 187 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 SC5DO75845 299 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 TRGV3P03979 118 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 GSTP1P09211 210 aaKnown RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 EDN2P20800 178 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 FUT3P21217 361 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 SYNJ2BPP57105 145 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 PJVKQ0ZLH3 352 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 MRPL28Q13084 256 aaKnown RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 DYRK1AQ13627 763 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 C6orf141Q5SZD1 244 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 IL34Q6ZMJ4 242 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 SGPP2Q8IWX5 399 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 OR2AK2Q8NG84 335 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 PGLYRP3Q96LB9 341 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 Q96MT0 163 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 YPEL2Q96QA6 119 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 NICN1Q9BSH3 213 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 HDHD3Q9BSH5 251 aaPredicted RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 CST11Q9H112 138 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 PLEKHA3Q9HB20 300 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 SPACA1Q9HBV2 294 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 FGF20Q9NP95 211 aaPredicted RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 MRPS18AQ9NVS2 196 aaKnown RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 BABAM2Q9NXR7 383 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 OR1A1Q9P1Q5 309 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 METTL1Q9UBP6 276 aaKnown RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 RNF150Q9ULK6 438 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 STUB1Q9UNE7 303 aa6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 RPL36Q9Y3U8 105 aaKnown RBP6.59□□□□□ -1.35
SHKBP1-220ENST00000599716 MUC4Q99102 2169 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 TRBV5-7A0A0A0MS05 114 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 LOC100996750A0A140TA64 210 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 SLC25A17O43808 307 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 PDCD6O75340 191 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 PROP1O75360 226 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 IGKV1-16P04430 117 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 VEGFCP49767 419 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 CRIP2P52943 208 aaPredicted RBP6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 SSBP2P81877 361 aaPredicted RBP6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 PSG5Q15238 335 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 HMGN3Q15651 99 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 Q499Y3 187 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 CCDC58Q4VC31 144 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 STEAP3Q658P3 488 aa6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 ZNF660Q6AZW8 331 aaPredicted RBP6.58□□□□□ -1.36
SHKBP1-220ENST00000599716 TRAT1Q6PIZ9 186 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms