RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 OR1A1Q9P1Q5 309 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 STEAP1Q9UHE8 339 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 ZNF580Q9UK33 172 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 KMT2CQ8NEZ4 4911 aaKnown RBP8.46□□□□□ -1.06
VPS39-208ENST00000564994 SHISA3A0PJX4 238 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 G3V318 75 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 LDLRAD4O15165 306 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 ATP6V0E1O15342 81 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 NBR2O15453 112 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 NDUFA3O95167 84 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 HLA-DRB1P01911 266 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 SCTP09683 121 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 CT45A6P0DMU7 189 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 CT45A5P0DMU8 189 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 CT45A7P0DMV0 189 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 VDAC1P21796 283 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 PSMA1P25786 263 aaKnown RBP8.45□□□□□ -1.06
VPS39-208ENST00000564994 VEGFCP49767 419 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 HLA-DRB3P79483 266 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 KIAA0141Q14154 515 aaPredicted RBP8.45□□□□□ -1.06
VPS39-208ENST00000564994 KIR2DS1Q14954 304 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 RAB11BQ15907 218 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 SSX1Q16384 188 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 C5orf64Q2M2E5 130 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 C2orf76Q3KRA6 126 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 PLAC9Q5JTB6 97 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 FAM71F2Q6NXP2 309 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 FAM131AQ6UXB0 335 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 IZUMO2Q6UXV1 221 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 GLDNQ6ZMI3 551 aaPredicted RBP8.45□□□□□ -1.06
VPS39-208ENST00000564994 MOB1BQ7L9L4 216 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 NPBQ8NG41 125 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 MYOZ3Q8TDC0 251 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 CNBD2Q96M20 576 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 PECRQ9BY49 303 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 KLK15Q9H2R5 256 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 OR51J1Q9H342 316 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 RIMS4Q9H426 269 aaPredicted RBP8.45□□□□□ -1.06
VPS39-208ENST00000564994 Q9N2K0 584 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 PIPOXQ9P0Z9 390 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 SLC23A1Q9UHI7 598 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 HSF4Q9ULV5 492 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 FBXO7Q9Y3I1 522 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 WSB1Q9Y6I7 421 aa8.45□□□□□ -1.06
VPS39-208ENST00000564994 IGKV1-6A0A0C4DH72 117 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 TMEM272A0A1B0GTI8 110 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 ITGB1BP1O14713 200 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 RAB29O14966 203 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 PROP1O75360 226 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 IGLV1-40P01703 118 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 SNRPBP14678 240 aaKnown RBP8.44□□□□□ -1.06
VPS39-208ENST00000564994 RAB25P57735 213 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 NDPQ00604 133 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 TBCEQ15813 527 aaPredicted RBP8.44□□□□□ -1.06
VPS39-208ENST00000564994 DEFB121Q5J5C9 76 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 HES5Q5TA89 166 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 LIN54Q6MZP7 749 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 OR8U1Q8NH10 309 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 DPF1Q92782 380 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 FAM3DQ96BQ1 224 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 MCRIP2Q9BUT9 160 aaKnown RBP8.44□□□□□ -1.06
VPS39-208ENST00000564994 GPR61Q9BZJ8 451 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 C11orf54Q9H0W9 315 aaPredicted RBP8.44□□□□□ -1.06
VPS39-208ENST00000564994 ACOT13Q9NPJ3 140 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 PARP11Q9NR21 331 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 V9GY05 133 aa8.44□□□□□ -1.06
VPS39-208ENST00000564994 TRAV41A0A0B4J266 112 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 H0YJW9 148 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 DENRO43583 198 aaKnown RBP8.43□□□□□ -1.06
VPS39-208ENST00000564994 OR5H8P0DN80 308 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 ZBTB25P24278 435 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 CEACAM6P40199 344 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 LUMP51884 338 aaPredicted RBP8.43□□□□□ -1.06
VPS39-208ENST00000564994 OR10A3P58181 314 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 LINC00205P59089 165 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 FHL3Q13643 280 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 MOGAT2Q3SYC2 334 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 C19orf54Q5BKX5 351 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 ASPHD1Q5U4P2 390 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 ZNF367Q7RTV3 350 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 DRAXINQ8NBI3 349 aaPredicted RBP8.43□□□□□ -1.06
VPS39-208ENST00000564994 OR5AN1Q8NGI8 311 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 C4orf3Q8WVX3 66 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 CMSS1Q9BQ75 279 aaKnown RBP8.43□□□□□ -1.06
VPS39-208ENST00000564994 FBXL15Q9H469 300 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 GNB4Q9HAV0 340 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 C12orf4Q9NQ89 552 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 RNF150Q9ULK6 438 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 KCNK7Q9Y2U2 307 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 SORL1Q92673 2214 aa8.43□□□□□ -1.06
VPS39-208ENST00000564994 ERICH4A6NGS2 130 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 OR5H14A6NHG9 310 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 I3L521 148 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 FCN1O00602 326 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 RRHO14718 337 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 SOX15O60248 233 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 EGR2P11161 476 aaPredicted RBP8.42□□□□□ -1.06
VPS39-208ENST00000564994 HSPA13P48723 471 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 C11orf87Q6NUJ2 197 aa8.42□□□□□ -1.06
VPS39-208ENST00000564994 CD200R1LQ6Q8B3 271 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms