RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 C6orf201Q7Z4U5 140 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 CCL4L1Q8NHW4 92 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF519Q8TB69 540 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 NAGKQ9UJ70 344 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 A0A1B0GW64 132 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 IGHV3-9P01782 118 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 FAM157BP0CG42 384 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 HKR1P10072 659 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 HIST3H3Q16695 136 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 TMEM91Q6ZNR0 172 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 OR51M1Q9H341 326 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 PLSCR2Q9NRY7 297 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 TREM2Q9NZC2 230 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 PILRAQ9UKJ1 303 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 TAF1P21675 1872 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 IGHV3-15A0A0B4J1V0 119 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 TM4SF5O14894 197 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 ACAA2P42765 397 aaKnown RBP6.77□□□□□ -1.33
VPS13D-211ENST00000543710 TMEM255AQ5JRV8 349 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 ALKBH3Q96Q83 286 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-211ENST00000543710 METTL1Q9UBP6 276 aaKnown RBP6.77□□□□□ -1.33
VPS13D-211ENST00000543710 KIAA1324LA8MWY0 1029 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-211ENST00000543710 MGST3O14880 152 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 NEURL1O76050 574 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 METAP1P53582 386 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 PSG6Q00889 435 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 SMUG1Q53HV7 270 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 ZNF506Q5JVG8 444 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 SELENOHQ8IZQ5 122 aaKnown RBP6.77□□□□□ -1.33
VPS13D-211ENST00000543710 GAPTQ8N292 157 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 PCGF1Q9BSM1 259 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 SPANXDQ9BXN6 97 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 GPR27Q9NS67 375 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 GPR132Q9UNW8 380 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 A0A087X0M5 115 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 A0A096LPE4 126 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 A0A1B0GX30 115 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 A0A1W2PPZ6 126 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 PLA2G10O15496 165 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 GHRHP01286 108 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 CBR1P16152 277 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 CA6P23280 308 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 BIVMQ86UB2 503 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 PCNPQ8WW12 178 aaKnown RBP6.77□□□□□ -1.33
VPS13D-211ENST00000543710 CLEC5AQ9NY25 188 aa6.77□□□□□ -1.33
VPS13D-211ENST00000543710 RCC2Q9P258 522 aaKnown RBP6.77□□□□□ -1.33
VPS13D-211ENST00000543710 C7orf77A4D0Y5 90 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 A8MWL6 223 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 KLF7O75840 302 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 CTLA4P16410 223 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 LSM11P83369 360 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 FBXW9Q5XUX1 488 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 CHST1O43916 411 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 VSIG8P0DPA2 414 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 RPL7P18124 248 aaKnown RBP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 PAPPA-AS1Q5QFB9 102 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 PQLC2Q6ZP29 291 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 TGIF2LYQ8IUE0 185 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 OR1P1Q8NH06 330 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 RBKSQ9H477 322 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 IDI2-AS1Q9NZ38 188 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 UQCR10Q9UDW1 63 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 WASHC3Q9Y3C0 194 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 WIPI2Q9Y4P8 454 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 A0A0B4J293 547 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 ZNF729A6NN14 1252 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 ANKRD36A6QL64 1941 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 TMEM229AB2RXF0 380 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 MAGEA5P43359 124 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 MAP1BP46821 2468 aaKnown RBP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 MVDP53602 400 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 SLC25A53Q5H9E4 307 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 OR1B1Q8NGR6 318 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 PAXXQ9BUH6 204 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 ABHD14AQ9BUJ0 271 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 SEPSECSQ9HD40 501 aaKnown RBP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 TMEM30AQ9NV96 361 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 IGHV5-51A0A0C4DH38 117 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 SMIM10L1P0DMW3 83 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 NPY1RP25929 384 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 CD1BP29016 333 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 HERPUD1Q15011 391 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 TWIST1Q15672 202 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 ZNF788Q6ZQV5 615 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 LYG1Q8N1E2 194 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 MUC15Q8N387 334 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 SMIM10Q96HG1 83 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 PRSS27Q9BQR3 290 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 RSG1Q9BU20 258 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 TPRP12270 2363 aaKnown RBP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 LOC101059948A0A1B0GTJ6 334 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 K7N7A8 449 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 CDC42EP2O14613 210 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 NDUFS6O75380 124 aaKnown RBP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 DANCRP0C864 163 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 RPL29P47914 159 aaKnown RBP6.76□□□□□ -1.33
VPS13D-211ENST00000543710 PGFP49763 221 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 PMP22Q01453 160 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 OLIG3Q7RTU3 272 aa6.76□□□□□ -1.33
VPS13D-211ENST00000543710 C5orf17Q8NAS9 161 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms