RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 SLC25A21Q9BQT8 299 aaPredicted RBP4.84□□□□□ -1.63
USP39-213ENST00000467885 MARVELD1Q9BSK0 173 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 RSRP1Q9BUV0 290 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 SUCNR1Q9BXA5 334 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 ALX4Q9H161 411 aaPredicted RBP4.84□□□□□ -1.63
USP39-213ENST00000467885 C5orf66Q9H5L9 145 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 C7orf69Q9H7B7 122 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 METTL8Q9H825 291 aaKnown RBP4.84□□□□□ -1.63
USP39-213ENST00000467885 HEXA-AS1Q9H8Q6 139 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 RAB9BQ9NP90 201 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 CCL28Q9NRJ3 127 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 MCUBQ9NWR8 336 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 HIF1ANQ9NWT6 349 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 ZNRD1Q9P1U0 126 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 SCP2D1Q9UJQ7 156 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 SESN1Q9Y6P5 492 aa4.84□□□□□ -1.63
USP39-213ENST00000467885 FLNBO75369 2602 aaKnown RBP4.84□□□□□ -1.63
USP39-213ENST00000467885 FAM240BA0A1B0GVZ2 78 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 hCG_1809904A0A1W2PP81 198 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 A0A1W2PPE2 198 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 A0A1W2PR64 198 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 A0A1W2PRV1 198 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 BUB1B-PAK6H3BSN5 160 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 SMAD7O15105 426 aaKnown RBP4.83□□□□□ -1.64
USP39-213ENST00000467885 HSPA12AO43301 675 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 PI3P19957 117 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 GATA3P23771 443 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 FAUP35544 74 aaKnown RBP4.83□□□□□ -1.64
USP39-213ENST00000467885 LUMP51884 338 aaPredicted RBP4.83□□□□□ -1.64
USP39-213ENST00000467885 UBE2E1P51965 193 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 PRRX1P54821 245 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 DEFA1P59665 94 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 DEFA3P59666 94 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 DIAPH2-AS1Q14236 149 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 C21orf62-AS1Q17RA5 79 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 TMEM30BQ3MIR4 351 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 SCGB2B2Q4G0G5 96 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 KLF17Q5JT82 389 aaPredicted RBP4.83□□□□□ -1.64
USP39-213ENST00000467885 DCAF12L2Q5VW00 463 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 LPCAT3Q6P1A2 487 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 BTNL3Q6UXE8 466 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 Q6ZNX1 250 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 VMO1Q7Z5L0 202 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 SLC25A42Q86VD7 318 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 PNKDQ8N490 385 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 DRAM1Q8N682 238 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 ADAD2Q8NCV1 583 aaKnown RBP4.83□□□□□ -1.64
USP39-213ENST00000467885 BEND2Q8NDZ0 799 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 BVESQ8NE79 360 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 OR9G1Q8NH87 305 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 TMEM230Q96A57 120 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 CREB3L1Q96BA8 519 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 UPRTQ96BW1 309 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 ABHD14BQ96IU4 210 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 AKR1E2Q96JD6 320 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 GINS4Q9BRT9 223 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 PCGF1Q9BSM1 259 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 SLC5A7Q9GZV3 580 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 MMP28Q9H239 520 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 GHITMQ9H3K2 345 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 SIRT7Q9NRC8 400 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 ONECUT1Q9UBC0 465 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 GNG12Q9UBI6 72 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 ZNF69Q9UC07 566 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 VSIG4Q9Y279 399 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 SOX21Q9Y651 276 aaPredicted RBP4.83□□□□□ -1.64
USP39-213ENST00000467885 AUP1Q9Y679 476 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 ARHGAP32A7KAX9 2087 aa4.83□□□□□ -1.64
USP39-213ENST00000467885 IGHV2-26A0A0B4J1V2 119 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 FAM172BPA6NC97 362 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 ODF3BA8MYP8 253 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 J3QLI3 93 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 MPPED1O15442 326 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 RGS11O94810 467 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 PTTG1O95997 202 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 CTSDP07339 412 aaPredicted RBP4.82□□□□□ -1.64
USP39-213ENST00000467885 CT45A6P0DMU7 189 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 CT45A5P0DMU8 189 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 CT45A7P0DMV0 189 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 VSIG10L2P0DP72 767 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 ZNF137PP52743 207 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 RAG2P55895 527 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 FXYD4P59646 89 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 RPL30P62888 115 aaKnown RBP4.82□□□□□ -1.64
USP39-213ENST00000467885 SUPT4H1P63272 117 aaKnown RBP4.82□□□□□ -1.64
USP39-213ENST00000467885 KLRD1Q13241 179 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 SURF2Q15527 256 aaPredicted RBP4.82□□□□□ -1.64
USP39-213ENST00000467885 MSMO1Q15800 293 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 RGS21Q2M5E4 152 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 ZNF585BQ52M93 769 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 METTL11BQ5VVY1 283 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 NCR3LG1Q68D85 454 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 ZNF626Q68DY1 528 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 ZNF818PQ6ZRF7 136 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 DYNAPQ8N1N2 210 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 CENPSQ8N2Z9 138 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 ZDHHC22Q8N966 263 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 ZBTB34Q8NCN2 500 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 OR4P4Q8NGL7 312 aa4.82□□□□□ -1.64
USP39-213ENST00000467885 OR13D1Q8NGV5 346 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms