RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 NABP2Q9BQ15 211 aa5.53□□□□□ -1.52
VPS41-208ENST00000448833 HSPB9Q9BQS6 159 aa5.53□□□□□ -1.52
VPS41-208ENST00000448833 FAAP24Q9BTP7 215 aa5.53□□□□□ -1.52
VPS41-208ENST00000448833 TM2D1Q9BX74 207 aa5.53□□□□□ -1.52
VPS41-208ENST00000448833 CHMP1AQ9HD42 196 aaPredicted RBP5.53□□□□□ -1.52
VPS41-208ENST00000448833 ZNF581Q9P0T4 197 aa5.53□□□□□ -1.52
VPS41-208ENST00000448833 SLC23A1Q9UHI7 598 aa5.53□□□□□ -1.52
VPS41-208ENST00000448833 ZNF256Q9Y2P7 627 aaPredicted RBP5.53□□□□□ -1.52
VPS41-208ENST00000448833 TRBV6-6A0A0A6YYG2 114 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 PTGES3LE9PB15 166 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 H7C2Y5 167 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 CASQ2O14958 399 aaPredicted RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 HSPA12AO43301 675 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 NDUFA3O95167 84 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 NAPSAO96009 420 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 CDK1P06493 297 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 CD37P11049 281 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 SLC2A2P11168 524 aaPredicted RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 ARSBP15848 533 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 MYF6P23409 242 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 BLVRBP30043 206 aaPredicted RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 PPP1CCP36873 323 aaKnown RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 SERPINB10P48595 397 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 MRPS15P82914 257 aaKnown RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 TAGLNQ01995 201 aaKnown RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 RCN1Q15293 331 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 MED22Q15528 200 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 HMGN3Q15651 99 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 ZNF260Q3ZCT1 412 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 AKIRIN2Q53H80 203 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 RBM48Q5RL73 367 aaKnown RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 C6orf141Q5SZD1 244 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 SIGIRRQ6IA17 410 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 C18orf65Q6ZTR6 163 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 CEACAM19Q7Z692 300 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 ODF3L1Q8IXM7 274 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 MINDY2Q8NBR6 621 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 OR52L2PQ8NGH6 319 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 FLYWCH2Q96CP2 140 aaKnown RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 DUX3Q96PT4 197 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 TSNAXQ99598 290 aaKnown RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 SULT4A1Q9BR01 284 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 ANKRD60Q9BZ19 345 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 SLA2Q9H6Q3 261 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 PARP11Q9NR21 331 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 FKBP14Q9NWM8 211 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 SCOCQ9UIL1 159 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 ZNF221Q9UK13 617 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 HSF4Q9ULV5 492 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 FOXA2Q9Y261 457 aaPredicted RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 WASHC3Q9Y3C0 194 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 TPRKBQ9Y3C4 175 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 LSM4Q9Y4Z0 139 aaKnown RBP5.52□□□□□ -1.53
VPS41-208ENST00000448833 SMAD5-AS1Q9Y6J3 95 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 U3KQK5 164 aa5.52□□□□□ -1.53
VPS41-208ENST00000448833 SAA2-SAA4A0A096LPE2 208 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 IGHV7-81A0A0B4J1V7 117 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 TMEM14DPA8MWL7 114 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 I3L521 148 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 RRHO14718 337 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 OVOL1O14753 267 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 SLC22A1O15245 554 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 ATP6V0E1O15342 81 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 SPDEFO95238 335 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 TFAP2AP05549 437 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 GNAO1P09471 354 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 UCHL1P09936 223 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 SAA2P0DJI9 122 aaPredicted RBP5.51□□□□□ -1.53
VPS41-208ENST00000448833 VSIG8P0DPA2 414 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 CEACAM6P40199 344 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 CRIP2P52943 208 aaPredicted RBP5.51□□□□□ -1.53
VPS41-208ENST00000448833 CBX3Q13185 183 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 DEFB136Q30KP8 78 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 MOGAT2Q3SYC2 334 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 OGFRL1Q5TC84 451 aaPredicted RBP5.51□□□□□ -1.53
VPS41-208ENST00000448833 C11orf87Q6NUJ2 197 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 ZNF880Q6PDB4 577 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 CD200R1LQ6Q8B3 271 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 ZNF562Q6V9R5 426 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 C6orf201Q7Z4U5 140 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 FAM89BQ8N5H3 189 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 OR56B1Q8NGI3 324 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 OR6Q1Q8NGQ2 317 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 SETD6Q8TBK2 473 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 UFD1Q92890 307 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 TMEM68Q96MH6 324 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 TMED9Q9BVK6 235 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 ELOVL1Q9BW60 279 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 MRPL20Q9BYC9 149 aaKnown RBP5.51□□□□□ -1.53
VPS41-208ENST00000448833 PLGRKTQ9HBL7 147 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 ISYNA1Q9NPH2 558 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 WSB1Q9Y6I7 421 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 TENM3Q9P273 2699 aa5.51□□□□□ -1.53
VPS41-208ENST00000448833 A0A0G2JLM5 398 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 A0A1W2PN81 502 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 LINC01619G3V211 115 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 G3V318 75 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 C3orf84H3BNL1 204 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 H3BUA1 57 aa5.5□□□□□ -1.53
VPS41-208ENST00000448833 SLC17A2O00624 439 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms