RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 FXYD6Q9H0Q3 95 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 OR2D2Q9H210 308 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 TMEM133Q9H2Q1 129 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 PIPOXQ9P0Z9 390 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 GPR132Q9UNW8 380 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 POLR3KQ9Y2Y1 108 aaPredicted RBP11.66□□□□□ -0.54
SKA1-202ENST00000398452 KIAA2026Q5HYC2 2103 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 MALRD1Q5VYJ5 2156 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 TEX13DA0A0J9YY54 714 aaPredicted RBP11.65□□□□□ -0.54
SKA1-202ENST00000398452 RNF212BA8MTL3 300 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 TOX4O94842 621 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 ANXA3P12429 323 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 SPNP16150 400 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 AKR1C4P17516 323 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 DLX6P56179 175 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 NCR3LG1Q68D85 454 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 SGPP2Q8IWX5 399 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 ABHD12Q8N2K0 398 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 ZNF645Q8N7E2 425 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 ZNF596Q8TC21 504 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 TNFRSF14Q92956 283 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 S1PR3Q99500 378 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 CLEC7AQ9BXN2 247 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 SIRT7Q9NRC8 400 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 RNF150Q9ULK6 438 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 KCNIP3Q9Y2W7 256 aa11.65□□□□□ -0.54
SKA1-202ENST00000398452 AMMECR1Q9Y4X0 333 aaPredicted RBP11.65□□□□□ -0.54
SKA1-202ENST00000398452 RAB29O14966 203 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 MMP23AO75900 390 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 IGHV3-7P01780 117 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 PRTN3P24158 256 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 COX7A1P24310 79 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 PIGPP57054 158 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 UBE2MP61081 183 aaKnown RBP11.64□□□□□ -0.55
SKA1-202ENST00000398452 CATR1Q13166 79 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 LYG1Q8N1E2 194 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 LEAP2Q969E1 77 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 TMEM186Q96B77 213 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 UPRTQ96BW1 309 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 PCGF1Q9BSM1 259 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 RSRP1Q9BUV0 290 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 BEX2Q9BXY8 128 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 BEX1Q9HBH7 125 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 CCL28Q9NRJ3 127 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 FLVCR2Q9UPI3 526 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 VSIG4Q9Y279 399 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 INSIG2Q9Y5U4 225 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 NF1P21359 2839 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 DOCK11Q5JSL3 2073 aa11.64□□□□□ -0.55
SKA1-202ENST00000398452 A0A087X0M5 115 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 IGKV1D-13A0A0B4J2D9 117 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 A0A1B0GX30 115 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 IGKV1-13P0DP09 117 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 ANXA7P20073 488 aaKnown RBP11.63□□□□□ -0.55
SKA1-202ENST00000398452 VAMP1P23763 118 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 LGALS4P56470 323 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 MSMO1Q15800 293 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 PHLDA2Q53GA4 152 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 TMEM128Q5BJH2 165 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 CYB5R2Q6BCY4 276 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 FAHD2BQ6P2I3 314 aaPredicted RBP11.63□□□□□ -0.55
SKA1-202ENST00000398452 VMO1Q7Z5L0 202 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 PNKDQ8N490 385 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 C8orf31Q8N9H6 132 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 FAHD2AQ96GK7 314 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 ALX4Q9H161 411 aaPredicted RBP11.63□□□□□ -0.55
SKA1-202ENST00000398452 MMP26Q9NRE1 261 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 SLC2A9Q9NRM0 540 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 AUP1Q9Y679 476 aa11.63□□□□□ -0.55
SKA1-202ENST00000398452 IGHV2-26A0A0B4J1V2 119 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 PIGBOS1A0A0B4J2F0 54 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 A0A1W2PPE3 182 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 J3QR06 171 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 CREBL2O60519 120 aaPredicted RBP11.62□□□□□ -0.55
SKA1-202ENST00000398452 TGFAP01135 160 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 OR4E1P0C645 316 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 PI3P19957 117 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 CD34P28906 385 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 GNRHRP30968 328 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 CBX3Q13185 183 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 TATDN3Q17R31 274 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 TMEM249Q2WGJ8 235 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 ZNF818PQ6ZRF7 136 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 SLC25A48Q6ZT89 311 aaKnown RBP11.62□□□□□ -0.55
SKA1-202ENST00000398452 SLC25A42Q86VD7 318 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 LINC00528Q8N1L1 170 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 LINC00311Q8N616 119 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.62□□□□□ -0.55
SKA1-202ENST00000398452 RTN4IP1Q8WWV3 396 aaPredicted RBP11.62□□□□□ -0.55
SKA1-202ENST00000398452 ABHD14BQ96IU4 210 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 C5orf66Q9H5L9 145 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 HIF1ANQ9NWT6 349 aa11.62□□□□□ -0.55
SKA1-202ENST00000398452 YLPM1P49750 1951 aaKnown RBP11.61□□□□□ -0.55
SKA1-202ENST00000398452 J3QLI3 93 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 B3GALNT1O75752 331 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 HLA-AP01891 365 aaKnown RBP11.61□□□□□ -0.55
SKA1-202ENST00000398452 ARG1P05089 322 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 IL5P05113 134 aa11.61□□□□□ -0.55
SKA1-202ENST00000398452 ZNF16P17020 682 aaPredicted RBP11.61□□□□□ -0.55
SKA1-202ENST00000398452 HOXB4P17483 251 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms