RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TGIF2LYQ8IUE0 185 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 SFTPA1Q8IWL2 248 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 SGMS2Q8NHU3 365 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 HDHD3Q9BSH5 251 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 OR5AC2Q9NZP5 309 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 HSPB1P04792 205 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 LRRC75AQ8NAA5 344 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 TMPRSS2O15393 492 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF324O75467 553 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 HIST1H1BP16401 226 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 FBLN7Q53RD9 439 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 FAM27BQ5VT28 67 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 C1orf53Q5VUE5 145 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 OR10AG1Q8NH19 301 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 HARBI1Q96MB7 349 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF665Q9H7R5 613 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 CLEC5AQ9NY25 188 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 C1RLQ9NZP8 487 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 DTX4Q9Y2E6 619 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 GLI3P10071 1580 aa8.92□□□□□ -0.98
LIMCH1-203ENST00000396595 MPTX1A8MV57 137 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 LGALS7P47929 136 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 OR8I2Q8N0Y5 310 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 OR5A1Q8NGJ0 315 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 FLYWCH2Q96CP2 140 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 RASL11BQ9BPW5 248 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 M0R296 226 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 HLA-DRB1P01911 266 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 HBZP02008 142 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 C1orf100Q5SVJ3 147 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 INO80CQ6PI98 192 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 MOGAT3Q86VF5 341 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 Q8WTZ3 238 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 MARVELD3Q96A59 401 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 SSBP4Q9BWG4 385 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 RAB1BQ9H0U4 201 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 ELOVL5Q9NYP7 299 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 COX11Q9Y6N1 276 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 MPDU1O75352 247 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 RELBQ01201 579 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 TNFRSF9Q07011 255 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 HERPUD1Q15011 391 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 OR1K1Q8NGR3 316 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF721Q8TF20 911 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 RARRES2Q99969 163 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 TMEM70Q9BUB7 260 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 A1L4Q6 167 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 H0Y980 276 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 C1QCP02747 245 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 LDLRAD3Q86YD5 345 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 RFLNBQ8N5W9 214 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 SLC25A38Q96DW6 304 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 WDR54Q9H977 334 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 NPIPB9F8W1W9 429 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 IGKV1D-16P01601 117 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 FCARP24071 287 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 KIR2DL1P43626 348 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 SOX8P57073 446 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 SLC25A40Q8TBP6 338 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 SAP30LQ9HAJ7 183 aa8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 MRPS16Q9Y3D3 137 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 SIPA1L3O60292 1781 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-203ENST00000396595 STRCQ7RTU9 1775 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 GCM2O75603 506 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 IFI6P09912 130 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 RUNX1Q01196 453 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 IFITM2Q01629 132 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 LDLRAD2Q5SZI1 272 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 ZFAND6Q6FIF0 208 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF788Q6ZQV5 615 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 AQP10Q96PS8 301 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 MRPL16Q9NX20 251 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 NHSL1Q5SYE7 1610 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 TRAV8-2A0A0B4J237 113 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 TMEM262E9PQX1 116 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 DNASE2O00115 360 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 LEPROTL1O95214 131 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 CD3EP07766 207 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 MAGEA5P43359 124 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 NPVFQ9HCQ7 196 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 CLN8Q9UBY8 286 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 TRAV39A0A0B4J263 110 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 C21orf140B9A014 251 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 J3QR06 171 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 SPINT1O43278 529 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 ERGP11308 486 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 WDR25Q64LD2 544 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF385AQ96PM9 386 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 ASCL3Q9NQ33 180 aa8.9□□□□□ -0.98
LIMCH1-203ENST00000396595 TRBV5-7A0A0A0MS05 114 aa8.9□□□□□ -0.99
LIMCH1-203ENST00000396595 FAM157AC9JC47 383 aa8.9□□□□□ -0.99
LIMCH1-203ENST00000396595 ISG15P05161 165 aa8.9□□□□□ -0.99
LIMCH1-203ENST00000396595 SPINK2P20155 84 aa8.9□□□□□ -0.99
LIMCH1-203ENST00000396595 OR2I1PQ8NGU4 316 aa8.9□□□□□ -0.99
LIMCH1-203ENST00000396595 TMEM222Q9H0R3 208 aa8.9□□□□□ -0.99
LIMCH1-203ENST00000396595 NPDC1Q9NQX5 325 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-203ENST00000396595 HPRT1P00492 218 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 OTX1P32242 354 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 P2RY4P51582 365 aa8.89□□□□□ -0.99
LIMCH1-203ENST00000396595 MEF2BQ02080 365 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms