RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 FAM90A24PP0C7X0 464 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 SMIM17P0DL12 118 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 HOXA5P20719 270 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 WNT5AP41221 380 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 MARS2Q96GW9 593 aaKnown RBP13.75□□□□□ -0.21
COL17A1-202ENST00000369733 ZDHHC8Q9ULC8 765 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 R4GN57 208 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 CORTO00230 105 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 KBTBD11O94819 623 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 CD82P27701 267 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 RPL13AP40429 203 aaKnown RBP13.75□□□□□ -0.21
COL17A1-202ENST00000369733 MAGEA5P43359 124 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 RTBDNQ9BSG5 229 aaPredicted RBP13.75□□□□□ -0.21
COL17A1-202ENST00000369733 IER2Q9BTL4 223 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 J3QRE1 110 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 MPDU1O75352 247 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 UCP3P55916 312 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 ZNF818PQ6ZRF7 136 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 C5orf17Q8NAS9 161 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 OR8A1Q8NGG7 326 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 OR52L2PQ8NGH6 319 aa13.75□□□□□ -0.21
COL17A1-202ENST00000369733 PCP4P48539 62 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 TNXAQ16473 311 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 SLC25A40Q8TBP6 338 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 RPEQ96AT9 228 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 MNX1P50219 401 aaPredicted RBP13.74□□□□□ -0.21
COL17A1-202ENST00000369733 GAS1P54826 345 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 FGFRL1Q8N441 504 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 PIKFYVEQ9Y2I7 2098 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 LNP1A1A4G5 178 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 TMEM210A6NLX4 147 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 ADAM11O75078 769 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 HPRT1P00492 218 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 NCBP2LA6PVI3 153 aaKnown RBP13.74□□□□□ -0.21
COL17A1-202ENST00000369733 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.74□□□□□ -0.21
COL17A1-202ENST00000369733 SSX8Q7RTT4 187 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 TDHQ8IZJ6 230 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 SPTBP11277 2137 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 ANKRD36A6QL64 1941 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 SOD3P08294 240 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 IBA57Q5T440 356 aaKnown RBP13.74□□□□□ -0.21
COL17A1-202ENST00000369733 SLC25A28Q96A46 364 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 PERPQ96FX8 193 aa13.74□□□□□ -0.21
COL17A1-202ENST00000369733 RHBDL1O75783 438 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 PMCHL1Q16048 86 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 GABRA6Q16445 453 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 OR8G5Q8NG78 346 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 FAM216AQ8WUB2 273 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 RNF126Q9BV68 326 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 AICDAQ9GZX7 198 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 TUBA4BQ9H853 241 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 ATG2BQ96BY7 2078 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 GRIFINA4D1Z8 144 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 SRP19P09132 144 aaKnown RBP13.73□□□□□ -0.21
COL17A1-202ENST00000369733 RNF224P0DH78 156 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 ZNF645Q8N7E2 425 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 OR51B2Q9Y5P1 312 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 J3QR06 171 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 CYB5R2Q6BCY4 276 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 ZNF501Q96CX3 271 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-202ENST00000369733 POLR2AP24928 1970 aaKnown RBP13.73□□□□□ -0.21
COL17A1-202ENST00000369733 C17orf51A8MQB3 221 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 ASPHD2Q6ICH7 369 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 CT55Q8WUE5 264 aa13.73□□□□□ -0.21
COL17A1-202ENST00000369733 IGLV3-21P80748 117 aaPredicted RBP13.72□□□□□ -0.21
COL17A1-202ENST00000369733 IZUMO4Q1ZYL8 232 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 ATG101Q9BSB4 218 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 ARRDC1-AS1Q9H2J1 176 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 TCFL5Q9UL49 500 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 IGHV5-10-1A0A0J9YXX1 117 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 FAM90A26D6RGX4 464 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 HLA-DQA1P01909 254 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 MOGAT3Q86VF5 341 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 TMEM116Q8NCL8 245 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 STXBP6Q8NFX7 210 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 PARD6GQ9BYG4 376 aaPredicted RBP13.72□□□□□ -0.21
COL17A1-202ENST00000369733 TMEM74BQ9NUR3 256 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 ZNHIT1O43257 154 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 TBX6O95947 436 aaPredicted RBP13.72□□□□□ -0.21
COL17A1-202ENST00000369733 DHRS13Q6UX07 377 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 MDP1Q86V88 176 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 TRAV17A0A0B4J275 112 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 C5orf67F2Z3F1 127 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 HBZP02008 142 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 CCL4P13236 92 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 MIC13Q5XKP0 118 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 LINC00114Q6XXX2 140 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 PAXXQ9BUH6 204 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 QTRT1Q9BXR0 403 aaKnown RBP13.72□□□□□ -0.21
COL17A1-202ENST00000369733 SAP30LQ9HAJ7 183 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 ONECUT1Q9UBC0 465 aa13.72□□□□□ -0.21
COL17A1-202ENST00000369733 AGFG2O95081 481 aa13.71□□□□□ -0.21
COL17A1-202ENST00000369733 OR2H2O95918 312 aa13.71□□□□□ -0.21
COL17A1-202ENST00000369733 COL10A1Q03692 680 aa13.71□□□□□ -0.21
COL17A1-202ENST00000369733 TNFRSF9Q07011 255 aa13.71□□□□□ -0.21
COL17A1-202ENST00000369733 Q8WTZ3 238 aa13.71□□□□□ -0.21
COL17A1-202ENST00000369733 CCL17Q92583 94 aa13.71□□□□□ -0.21
COL17A1-202ENST00000369733 FGF16O43320 207 aa13.71□□□□□ -0.21
COL17A1-202ENST00000369733 RAMP1O60894 148 aa13.71□□□□□ -0.21
COL17A1-202ENST00000369733 ACP1P24666 158 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms