RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 GLI3P10071 1580 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 OR4C46A6NHA9 309 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 DANCRP0C864 163 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 RPS11P62280 158 aaKnown RBP eCLIP12.85□□□□□ -0.35
CHD4-201ENST00000357008 SELENOTP62341 195 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 HOXA4Q00056 320 aaPredicted RBP12.85□□□□□ -0.35
CHD4-201ENST00000357008 PRSS53Q2L4Q9 553 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 MGST3O14880 152 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 ZNF735P0CB33 412 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 HINT1P49773 126 aaPredicted RBP12.85□□□□□ -0.35
CHD4-201ENST00000357008 LRRC75BQ2VPJ9 315 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 Q5BKY6 102 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 FAM216AQ8WUB2 273 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 MS4A5Q9H3V2 200 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 RBKSQ9H477 322 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 C5orf66Q9H5L9 145 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 F2RL2O00254 374 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 PGLYRP1O75594 196 aaPredicted RBP12.85□□□□□ -0.35
CHD4-201ENST00000357008 HES3Q5TGS1 186 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 PQLC2Q6ZP29 291 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 PILRAQ9UKJ1 303 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 DNAJC13O75165 2243 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 KIR2DL2P43627 348 aaPredicted RBP12.85□□□□□ -0.35
CHD4-201ENST00000357008 RELBQ01201 579 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 SPANXN1Q5VSR9 72 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 SLC25A47Q6Q0C1 308 aa12.85□□□□□ -0.35
CHD4-201ENST00000357008 CD74P04233 296 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 HIST1H2BAQ96A08 127 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 IL36RNQ9UBH0 155 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 RALYQ9UKM9 306 aaKnown RBP12.84□□□□□ -0.35
CHD4-201ENST00000357008 ZNF645Q8N7E2 425 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 MRPL18Q9H0U6 180 aaKnown RBP12.84□□□□□ -0.35
CHD4-201ENST00000357008 IGHV3OR15-7A0A075B7D8 119 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 M0R3E3 92 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 PRF1P14222 555 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 GPR146Q96CH1 333 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 RARRES2Q99969 163 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 CEACAM18A8MTB9 384 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 K7N7A8 449 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 SELENOHQ8IZQ5 122 aaKnown RBP12.84□□□□□ -0.35
CHD4-201ENST00000357008 AGAP20933 346 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 CEBPDP49716 269 aaPredicted RBP12.84□□□□□ -0.35
CHD4-201ENST00000357008 RND1Q92730 232 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 RHOVQ96L33 236 aa12.84□□□□□ -0.35
CHD4-201ENST00000357008 LOC389332A0A1B0GUA5 103 aa12.83□□□□□ -0.35
CHD4-201ENST00000357008 RNF224P0DH78 156 aa12.83□□□□□ -0.35
CHD4-201ENST00000357008 RPL31P62899 125 aaKnown RBP12.83□□□□□ -0.35
CHD4-201ENST00000357008 TMEM45BQ96B21 275 aa12.83□□□□□ -0.35
CHD4-201ENST00000357008 RP1P56715 2156 aa12.83□□□□□ -0.35
CHD4-201ENST00000357008 SIPA1L3O60292 1781 aaPredicted RBP12.83□□□□□ -0.36
CHD4-201ENST00000357008 FBLL1A6NHQ2 334 aaKnown RBP12.83□□□□□ -0.36
CHD4-201ENST00000357008 RECKO95980 971 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 SCNM1Q9BWG6 230 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 TMEM238LA0A1B0GVL6 79 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 A6NJY4 79 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 J3KRW8 73 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 FABP2P12104 132 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 FOXC1Q12948 553 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 C1orf210Q8IVY1 113 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 FGFRL1Q8N441 504 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 DLEC1Q9Y238 1755 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 STRCQ7RTU9 1775 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 A0A1W2PPE3 182 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 LMX1BO60663 402 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 CD8AP01732 235 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 CSRP3P50461 194 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 SPEM2Q0P670 501 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 DDA1Q9BW61 102 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 FAM117AQ9C073 453 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 TMEM189A5PLL7 270 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 MOSPD3O75425 235 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 MMDQ15546 238 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 TRIP6Q15654 476 aaKnown RBP12.83□□□□□ -0.36
CHD4-201ENST00000357008 WDR25Q64LD2 544 aaPredicted RBP12.83□□□□□ -0.36
CHD4-201ENST00000357008 ZNF841Q6ZN19 808 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 DEFB124Q8NES8 71 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 FAM206AQ9NX38 181 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 KNTC1P50748 2209 aa12.83□□□□□ -0.36
CHD4-201ENST00000357008 LEPROTL1O95214 131 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 GLIPR1P48060 266 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 OR52M1Q8NGK5 317 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 METTL1Q9UBP6 276 aaKnown RBP12.82□□□□□ -0.36
CHD4-201ENST00000357008 SLC25A10Q9UBX3 287 aaPredicted RBP12.82□□□□□ -0.36
CHD4-201ENST00000357008 SCN3AQ9NY46 2000 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 PQLC2LA1A4F0 135 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 LNP1A1A4G5 178 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 LINC00869P0C866 280 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 TMEM265A0A087WTH1 108 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 DHRS7CA6NNS2 312 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 OR2H2O95918 312 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 A0A0B4J293 547 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 APELAP0DMC3 54 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 KIF13BQ9NQT8 1826 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 A0A1W2PQF6 199 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 TRGC1P0CF51 173 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 COMPP49747 757 aaPredicted RBP12.82□□□□□ -0.36
CHD4-201ENST00000357008 TWIST1Q15672 202 aa12.82□□□□□ -0.36
CHD4-201ENST00000357008 ZNF501Q96CX3 271 aaPredicted RBP12.82□□□□□ -0.36
CHD4-201ENST00000357008 SDHCQ99643 169 aaPredicted RBP12.82□□□□□ -0.36
CHD4-201ENST00000357008 AMY1AP04745 511 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms