RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 OR13D1Q8NGV5 346 aa18.55■□□□□ 0.56
SHMT1-201ENST00000316694 ABHD5Q8WTS1 349 aa18.55■□□□□ 0.56
SHMT1-201ENST00000316694 TAF15Q92804 592 aaKnown RBP eCLIP18.55■□□□□ 0.56
SHMT1-201ENST00000316694 TREM2Q9NZC2 230 aa18.55■□□□□ 0.56
SHMT1-201ENST00000316694 HMGB3O15347 200 aaKnown RBP18.55■□□□□ 0.56
SHMT1-201ENST00000316694 SELEP16581 610 aa18.55■□□□□ 0.56
SHMT1-201ENST00000316694 CEBPDP49716 269 aaPredicted RBP18.55■□□□□ 0.56
SHMT1-201ENST00000316694 GTF3C1Q12789 2109 aa18.55■□□□□ 0.56
SHMT1-201ENST00000316694 NANOS1Q8WY41 292 aaKnown RBP18.55■□□□□ 0.56
SHMT1-201ENST00000316694 BCL2L2Q92843 193 aaPredicted RBP18.55■□□□□ 0.56
SHMT1-201ENST00000316694 OR2J1Q9GZK6 312 aa18.55■□□□□ 0.56
SHMT1-201ENST00000316694 ERVS71-1P61550 626 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 C9orf152Q5JTZ5 239 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 LURAP1LQ8IV03 231 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 ZNF383Q8NA42 475 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 LHX4Q969G2 390 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 P2RX4Q99571 388 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 SLC39A9Q9NUM3 307 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 POLDIP2Q9Y2S7 368 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 RAMP3O60896 148 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 ZNF737O75373 536 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 IFNA1P01562 189 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 TBC1D28Q2M2D7 210 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 FBXW9Q5XUX1 488 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 DBX2Q6ZNG2 339 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 PINX1Q96BK5 328 aaKnown RBP18.54■□□□□ 0.56
SHMT1-201ENST00000316694 DEFB127Q9H1M4 99 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 TMEM242Q9NWH2 141 aa18.54■□□□□ 0.56
SHMT1-201ENST00000316694 KRASP01116 189 aa18.53■□□□□ 0.56
SHMT1-201ENST00000316694 GRPP07492 148 aa18.53■□□□□ 0.56
SHMT1-201ENST00000316694 MDKP21741 143 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-201ENST00000316694 MPLP40238 635 aa18.53■□□□□ 0.56
SHMT1-201ENST00000316694 RND2P52198 227 aa18.53■□□□□ 0.56
SHMT1-201ENST00000316694 Q8IYB0 196 aa18.53■□□□□ 0.56
SHMT1-201ENST00000316694 HIST3H2BBQ8N257 126 aa18.53■□□□□ 0.56
SHMT1-201ENST00000316694 DDA1Q9BW61 102 aa18.53■□□□□ 0.56
SHMT1-201ENST00000316694 GP6Q9HCN6 339 aa18.53■□□□□ 0.56
SHMT1-201ENST00000316694 SH2D1BO14796 132 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 ALKBH6Q3KRA9 238 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 RPP25LQ8N5L8 163 aaKnown RBP18.52■□□□□ 0.56
SHMT1-201ENST00000316694 PFDN5Q99471 154 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 USF3Q68DE3 2245 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 CACNA1DQ01668 2161 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 DOCK11Q5JSL3 2073 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 IGKV1D-33P01593 117 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 IGKV1-33P01594 117 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 G6PCP35575 357 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 ERVK11-1P61568 191 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 TNFRSF9Q07011 255 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 ADIRFQ15847 76 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 FAM53AQ6NSI3 398 aaPredicted RBP18.52■□□□□ 0.56
SHMT1-201ENST00000316694 ZNF808Q8N4W9 903 aaPredicted RBP18.52■□□□□ 0.56
SHMT1-201ENST00000316694 SMIM7Q9BQ49 75 aa18.52■□□□□ 0.56
SHMT1-201ENST00000316694 MBNL3Q9NUK0 354 aaKnown RBP18.52■□□□□ 0.56
SHMT1-201ENST00000316694 RNF212BA8MTL3 300 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 CD55P08174 381 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 PPP1CBP62140 327 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 ZNF816Q0VGE8 651 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-201ENST00000316694 OR2D2Q9H210 308 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 LNP1A1A4G5 178 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 SP1P08047 785 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 IDH3GP51553 393 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-201ENST00000316694 WDR25Q64LD2 544 aaPredicted RBP18.51■□□□□ 0.55
SHMT1-201ENST00000316694 OR1L1Q8NH94 360 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 SLC25A22Q9H936 323 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 LOC400499M0QZD8 3231 aa18.51■□□□□ 0.55
SHMT1-201ENST00000316694 ELOA3CA0A087WX78 387 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-201ENST00000316694 PGA5P0DJD9 388 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 FABP4P15090 132 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 SLC10A1Q14973 349 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-201ENST00000316694 KCNIP1Q9NZI2 227 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 CLN8Q9UBY8 286 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 WIPI2Q9Y4P8 454 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 SMPD2O60906 423 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 OR3A1P47881 315 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 CD81P60033 236 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 RPS16P62249 146 aaKnown RBP18.5■□□□□ 0.55
SHMT1-201ENST00000316694 ACSF3Q4G176 576 aaPredicted RBP18.5■□□□□ 0.55
SHMT1-201ENST00000316694 TMEM14EPQ6UXP3 125 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 SNX22Q96L94 193 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 GPR87Q9BY21 358 aa18.5■□□□□ 0.55
SHMT1-201ENST00000316694 PSPNO60542 156 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 OPN1MWP04001 364 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 OPN1MW2P0DN77 364 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 OPN1MW3P0DN78 364 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 HOXA4Q00056 320 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-201ENST00000316694 MEF2BQ02080 365 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-201ENST00000316694 ZNF146Q15072 292 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 RPUSD4Q96CM3 377 aaKnown RBP18.49■□□□□ 0.55
SHMT1-201ENST00000316694 WDYHV1Q96HA8 205 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 PARD6GQ9BYG4 376 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-201ENST00000316694 OR5H1A6NKK0 313 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 FAM90A26D6RGX4 464 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 PTBP3O95758 552 aaKnown RBP18.49■□□□□ 0.55
SHMT1-201ENST00000316694 HAND1O96004 215 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 NCR3LG1Q68D85 454 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 ACSM6Q6P461 480 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 CXorf67Q86X51 503 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-201ENST00000316694 DEFB123Q8N688 67 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms