RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 LINC00052Q96N35 136 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 IMMP2LQ96T52 175 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 C20orf141Q9NUB4 165 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 ONECUT2O95948 504 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 HPXP02790 462 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 PPOXP50336 477 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 FNDC7Q5VTL7 733 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 SLC25A47Q6Q0C1 308 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 DHRS11Q6UWP2 260 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 BPIFA4PQ86YQ2 179 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 OR2Z1Q8NG97 314 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 JPT1Q9UK76 154 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 VSIG4Q9Y279 399 aa6.8□□□□□ -1.32
VPS13D-211ENST00000543710 RBP4P02753 201 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 SOD3P08294 240 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 CD33P20138 364 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 UBE2L3P68036 154 aaKnown RBP6.79□□□□□ -1.32
VPS13D-211ENST00000543710 PDZD11Q5EBL8 140 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 DNLZQ5SXM8 178 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 LRRTM1Q86UE6 522 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 TMEM251Q8N6I4 163 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 OR4P4Q8NGL7 312 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 TMEM70Q9BUB7 260 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 TMEM222Q9H0R3 208 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 ZMAT3Q9HA38 289 aaKnown RBP6.79□□□□□ -1.32
VPS13D-211ENST00000543710 SLC6A13Q9NSD5 602 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 DMRT1Q9Y5R6 373 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 H3BQ15 152 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 TCAPO15273 167 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 CD59P13987 128 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF774Q6NX45 483 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 MYEOVQ96EZ4 313 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 MISP3Q96FF7 219 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 FLRT3Q9NZU0 649 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 CARHSP1Q9Y2V2 147 aaKnown RBP6.79□□□□□ -1.32
VPS13D-211ENST00000543710 OR51B2Q9Y5P1 312 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 CITO14578 2027 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 ANKRD31Q8N7Z5 1873 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 HELTA6NFD8 242 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 SCGB1C2P0DMR2 95 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 MRPS11P82912 194 aaKnown RBP6.79□□□□□ -1.32
VPS13D-211ENST00000543710 JOSD1Q15040 202 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF146Q15072 292 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 C10orf128Q5T292 105 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 FAAP20Q6NZ36 180 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 PLPPR2Q96GM1 343 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 NRIP2Q9BQI9 281 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 ZMAT4Q9H898 229 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 BOLA1Q9Y3E2 137 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 MIA3Q5JRA6 1907 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 KIAA1217Q5T5P2 1943 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 RP1L1Q8IWN7 2480 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-211ENST00000543710 GOLGA4Q13439 2230 aaKnown RBP6.79□□□□□ -1.32
VPS13D-211ENST00000543710 WNT9BO14905 357 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 SYNGR1O43759 233 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 ZG16O60844 167 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 FCGR3AP08637 254 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 TGFBR1P36897 503 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 CD226Q15762 336 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 UBE2V2Q15819 145 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 AMMECR1LQ6DCA0 310 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 ABHD3Q8WU67 409 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 SNX22Q96L94 193 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 GPR82Q96P67 336 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 LMX1BO60663 402 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 CDAP32320 146 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 RIPPLY3P57055 190 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 TMEM116Q8NCL8 245 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 NPVFQ9HCQ7 196 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 NPDC1Q9NQX5 325 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-211ENST00000543710 PLSCR3Q9NRY6 295 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 PSG11Q9UQ72 335 aa6.79□□□□□ -1.32
VPS13D-211ENST00000543710 GUCA2BQ16661 112 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF260Q3ZCT1 412 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 RBPMS2Q6ZRY4 209 aaKnown RBP6.78□□□□□ -1.32
VPS13D-211ENST00000543710 PPP1R3EQ9H7J1 279 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 STAG3L3P0CL85 134 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 NAT1P18440 290 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 MAS1LP35410 378 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 G6PCP35575 357 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 Q6AWC8 147 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 SPINK14Q6IE38 97 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 LURAP1LQ8IV03 231 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 FLYWCH2Q96CP2 140 aaKnown RBP6.78□□□□□ -1.32
VPS13D-211ENST00000543710 DMRTA2Q96SC8 542 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 IGHV1-45A0A0A0MS14 117 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 NPIPB9F8W1W9 429 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 TSPAN2O60636 221 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 S100A4P26447 101 aaKnown RBP6.78□□□□□ -1.32
VPS13D-211ENST00000543710 ZNF79Q15937 498 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 Q6ZN92 141 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 C16orf82Q7Z2V1 217 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 SNRNP40Q96DI7 357 aaKnown RBP6.78□□□□□ -1.32
VPS13D-211ENST00000543710 SLC25A33Q9BSK2 321 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 TM2D1Q9BX74 207 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 ANK1P16157 1881 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 S1PR2O95136 353 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 RPL8P62917 257 aaKnown RBP6.78□□□□□ -1.32
VPS13D-211ENST00000543710 LCN2P80188 198 aa6.78□□□□□ -1.32
VPS13D-211ENST00000543710 CLEC12BQ2HXU8 276 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms