RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FAM212BQ9NTI7 297 aaPredicted RBP13.69□□□□□ -0.22
COL4A1-204ENST00000543140 ROS1P08922 2347 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 IGHV3OR15-7A0A075B7D8 119 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 IGHV3-43A0A0B4J1X8 118 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 H3BP45 60 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 SPRY3O43610 288 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 IGHV3-43DP0DP04 118 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 MUC1P15941 1255 aaPredicted RBP13.68□□□□□ -0.22
COL4A1-204ENST00000543140 PPP1CCP36873 323 aaKnown RBP13.68□□□□□ -0.22
COL4A1-204ENST00000543140 BLOC1S1P78537 153 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 ZNF585BQ52M93 769 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 OR2B11Q5JQS5 317 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 OR13A1Q8NGR1 328 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 TSNAXQ99598 290 aaKnown RBP13.68□□□□□ -0.22
COL4A1-204ENST00000543140 OR2D2Q9H210 308 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 CACNG5Q9UF02 275 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 SPP1P10451 314 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 CEACAM8P31997 349 aaPredicted RBP13.68□□□□□ -0.22
COL4A1-204ENST00000543140 ZNF616Q08AN1 781 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 GUCA2BQ16661 112 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 EIF2S3LQ2VIR3 472 aaKnown RBP13.68□□□□□ -0.22
COL4A1-204ENST00000543140 BTNL8Q6UX41 500 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 ODF3L1Q8IXM7 274 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 OR5C1Q8NGR4 320 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 PRR7Q8TB68 274 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 TMEM171Q8WVE6 324 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 OR2V2Q96R30 315 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 SFXN3Q9BWM7 321 aa13.68□□□□□ -0.22
COL4A1-204ENST00000543140 DEFB108AA8MXU0 73 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 F8W036 122 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 TRIM77I1YAP6 450 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 ATG12O94817 140 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 F12P00748 615 aaPredicted RBP13.67□□□□□ -0.22
COL4A1-204ENST00000543140 IGKV1-5P01602 117 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 PRDX2P32119 198 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 KLF3P57682 345 aaPredicted RBP13.67□□□□□ -0.22
COL4A1-204ENST00000543140 LTC4SQ16873 150 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 C1orf174Q8IYL3 243 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 PARP11Q9NR21 331 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 PRELID1Q9Y255 219 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 RNF115Q9Y4L5 304 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 BSNQ9UPA5 3926 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 NUDT19A8MXV4 375 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 PITX3O75364 302 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 PRH1P02810 166 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 SEC11BP0C7V7 166 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 DYNLT3P51808 116 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 PAX9P55771 341 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 MOGAT3Q86VF5 341 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 SLC25A31Q9H0C2 315 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 LIN7CQ9NUP9 197 aaKnown RBP13.67□□□□□ -0.22
COL4A1-204ENST00000543140 UQCC1Q9NVA1 299 aa13.67□□□□□ -0.22
COL4A1-204ENST00000543140 A0A1B0GU03 582 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 A0A1B0GWJ7 208 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 A8MXE2 369 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 IGHV3-13P01766 116 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 DANCRP0C864 163 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 GLRXP35754 106 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 F2RL1P55085 397 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 DOLPP1Q86YN1 238 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 NINJ1Q92982 152 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 ABHD14BQ96IU4 210 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 IGKV1D-17A0A075B6S4 117 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 IFNL4K9M1U5 179 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 RAMP3O60896 148 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 CAMLGP49069 296 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 NKX6-1P78426 367 aaPredicted RBP13.66□□□□□ -0.22
COL4A1-204ENST00000543140 TAGLNQ01995 201 aaKnown RBP13.66□□□□□ -0.22
COL4A1-204ENST00000543140 MZT1Q08AG7 82 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 BTNL3Q6UXE8 466 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 TMEM182Q6ZP80 229 aaPredicted RBP13.66□□□□□ -0.22
COL4A1-204ENST00000543140 PLPPR2Q96GM1 343 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 C5orf30Q96GV9 206 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 SCNM1Q9BWG6 230 aa13.66□□□□□ -0.22
COL4A1-204ENST00000543140 A0A1B0GV50 99 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 CD80P33681 288 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 CD200P41217 278 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 FAM201AQ5SY85 155 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 SPACA3Q8IXA5 215 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 GCSAMQ8N6F7 178 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 NKX6-2Q9C056 277 aaPredicted RBP13.65□□□□□ -0.22
COL4A1-204ENST00000543140 FAM74A7A6NL05 159 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 KIAA1324LA8MWY0 1029 aaPredicted RBP13.65□□□□□ -0.22
COL4A1-204ENST00000543140 SRRM5B3KS81 715 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 RNASEK-C17orf49H0YIS7 233 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 DSCAMO60469 2012 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 RPL30P62888 115 aaKnown RBP13.65□□□□□ -0.22
COL4A1-204ENST00000543140 FAM74A3Q4VXF1 159 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 MIDNQ504T8 468 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 ZNF295-AS1Q8N0V1 137 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 PUSL1Q8N0Z8 303 aaKnown RBP13.65□□□□□ -0.22
COL4A1-204ENST00000543140 ZNF645Q8N7E2 425 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 ITLN1Q8WWA0 313 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 CACFD1Q9UGQ2 172 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 DOCK11Q5JSL3 2073 aa13.65□□□□□ -0.22
COL4A1-204ENST00000543140 A0A0G2JNJ9 132 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 TSPAN15O95858 294 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 IAPPP10997 89 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 LINC00205P59089 165 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 Q8NA96 180 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms