RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 PAX6P26367 422 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 RPS19P39019 145 aaKnown RBP4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 CEACAM6P40199 344 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 CBX5P45973 191 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 RPL5P46777 297 aaKnown RBP4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 REG1BP48304 166 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 RAB13P51153 203 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 TMEM50BP56557 158 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 LOXL3P58215 753 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 ARPC4P59998 168 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 ZNF816Q0VGE8 651 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 PLA2G7Q13093 441 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 CBX3Q13185 183 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 GNMTQ14749 295 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 SRSF7Q16629 238 aaKnown RBP eCLIP4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 MOGAT2Q3SYC2 334 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 MORN2Q502X0 79 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 LY6G6FQ5SQ64 297 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 TMEM69Q5SWH9 247 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 HACD4Q5VWC8 232 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 OLFML2AQ68BL7 652 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 FAM71F2Q6NXP2 309 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 ZNF880Q6PDB4 577 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 SHISA2Q6UWI4 295 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 TMEM219Q86XT9 240 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 CLVS1Q8IUQ0 354 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 DYNAPQ8N1N2 210 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 DRAM1Q8N682 238 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 OR56B4Q8NH76 319 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 RAB2BQ8WUD1 216 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 RTN4IP1Q8WWV3 396 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 AJUBAQ96IF1 538 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 BCL7BQ9BQE9 202 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 SLC25A33Q9BSK2 321 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 ST6GALNAC5Q9BVH7 336 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 DCSTAMPQ9H295 470 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 IFT46Q9NQC8 304 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 ZNF221Q9UK13 617 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 ADAM30Q9UKF2 790 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 MOB4Q9Y3A3 225 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 RNF114Q9Y508 228 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 MMP24Q9Y5R2 645 aa4.35□□□□□ -1.71
HMGB1P40-201ENST00000525121 NIPBLQ6KC79 2804 aaeCLIP4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 IGHV1-3A0A0C4DH29 117 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 A0A1W2PPI3 338 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 TMEM235A6NFC5 223 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 CCDC160A6NGH7 325 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 FAM25AB3EWG3 89 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 FAM25CB3EWG5 89 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 FAM25GB3EWG6 89 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ITGB1BP1O14713 200 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 SLC31A2O15432 143 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ST8SIA5O15466 376 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 XRCC3O43542 346 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 CHST1O43916 411 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 TSPAN9O75954 239 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 MOSP00540 346 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 IGKV1D-33P01593 117 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 IGKV1-33P01594 117 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 APOA2P02652 100 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 TFAP2AP05549 437 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 SCTP09683 121 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ZNF182P17025 639 aaPredicted RBP4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 CD24P25063 80 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 CD1BP29016 333 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 TGFBR1P36897 503 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 VDAC2P45880 294 aaPredicted RBP4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 GPR12P47775 334 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ALDH3B2P48448 385 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ZNF137PP52743 207 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 TMBIM6P55061 237 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 CT45A1Q5HYN5 189 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 LDLRAD2Q5SZI1 272 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 Q6ZS49 121 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 Q6ZSV7 163 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 THNSL2Q86YJ6 484 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 IZUMO1Q8IYV9 350 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ZNF439Q8NDP4 499 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 OR8H1Q8NGG4 311 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 OR5H6Q8NGV6 325 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 OR2T10Q8NGZ9 312 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 CT45A3Q8NHU0 189 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 NUDCD2Q8WVJ2 157 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 SLC25A38Q96DW6 304 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 CMTM3Q96MX0 182 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 RBM14Q96PK6 669 aaKnown RBP4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 CABLES2Q9BTV7 478 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ZNF747Q9BV97 191 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ABCG5Q9H222 651 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 C16orf95Q9H693 158 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 RDH8Q9NYR8 311 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 OR1A1Q9P1Q5 309 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 COMMD3Q9UBI1 195 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 ZNF230Q9UIE0 474 aaPredicted RBP4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 KCNK7Q9Y2U2 307 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 DOCK11Q5JSL3 2073 aa4.34□□□□□ -1.71
HMGB1P40-201ENST00000525121 SAA2-SAA4A0A096LPE2 208 aa4.33□□□□□ -1.72
HMGB1P40-201ENST00000525121 IGHV3-72A0A0B4J1Y9 119 aa4.33□□□□□ -1.72
HMGB1P40-201ENST00000525121 OR5H14A6NHG9 310 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 153.8 ms