RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 KLK11Q9UBX7 282 aa12.16□□□□□ -0.46
NUP54-213ENST00000513352 TBL2Q9Y4P3 447 aaKnown RBP12.16□□□□□ -0.46
NUP54-213ENST00000513352 RBM7Q9Y580 266 aaKnown RBP12.16□□□□□ -0.46
NUP54-213ENST00000513352 V9GYH0 126 aa12.16□□□□□ -0.46
NUP54-213ENST00000513352 CTDSPLO15194 276 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 PMP2P02689 132 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 FBP1P09467 338 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 PAX6P26367 422 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 IL3RAP26951 378 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 CEACAM3P40198 252 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 CDK10Q15131 360 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 DEFB112Q30KQ8 113 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 CT45A1Q5HYN5 189 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 RBMS3Q6XE24 437 aaKnown RBP12.15□□□□□ -0.46
NUP54-213ENST00000513352 LYG1Q8N1E2 194 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 OR5AP2Q8NGF4 316 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 OR4P4Q8NGL7 312 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 CT45A3Q8NHU0 189 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 RPEQ96AT9 228 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 PARP12Q9H0J9 701 aaKnown RBP12.15□□□□□ -0.46
NUP54-213ENST00000513352 RDH8Q9NYR8 311 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 EHFQ9NZC4 300 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 DPM3Q9P2X0 92 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 ANAPC10Q9UM13 185 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 HILPDAQ9Y5L2 63 aa12.15□□□□□ -0.46
NUP54-213ENST00000513352 TRBV6-7A0A0A0MS04 114 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 LEUTXA8MZ59 168 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 BUB1B-PAK6H3BSN5 160 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 J3QRK9 145 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 ST8SIA5O15466 376 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 IGLV1-47P01700 117 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 NFYAP23511 347 aaPredicted RBP12.14□□□□□ -0.47
NUP54-213ENST00000513352 HRH1P35367 487 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 RAB7AP51149 207 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 SSX2Q16385 188 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 Q3ZCU0 254 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 MINOS1Q5TGZ0 78 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 SLC25A48Q6ZT89 311 aaKnown RBP12.14□□□□□ -0.47
NUP54-213ENST00000513352 C9orf139Q6ZV77 190 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 LURAP1LQ8IV03 231 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 SIGLECL1Q8N7X8 197 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 ZNF439Q8NDP4 499 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 EDARADDQ8WWZ3 215 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 TOMM40LQ969M1 308 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 CREB3L1Q96BA8 519 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 SOSTQ9BQB4 213 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 MTFP1Q9UDX5 166 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 MINOS1-NBL1R4GNA1 71 aa12.14□□□□□ -0.47
NUP54-213ENST00000513352 ZNF736B4DX44 427 aaPredicted RBP12.13□□□□□ -0.47
NUP54-213ENST00000513352 M0QYG6 137 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 GSTZ1O43708 216 aaPredicted RBP12.13□□□□□ -0.47
NUP54-213ENST00000513352 DIRAS3O95661 229 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 OR5H8P0DN80 308 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 NAT1P18440 290 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 PTBP1P26599 531 aaKnown RBP eCLIP12.13□□□□□ -0.479e-7■■□□□ 12.2
NUP54-213ENST00000513352 ZNF134P52741 427 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 ZNF79Q15937 498 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 TPTE2P1Q5T6R2 138 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 H1FOOQ8IZA3 346 aaPredicted RBP12.13□□□□□ -0.47
NUP54-213ENST00000513352 Q8N402 240 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 LINC00311Q8N616 119 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 C8orf31Q8N9H6 132 aa12.13□□□□□ -0.47
NUP54-213ENST00000513352 ZNF418Q8TF45 676 aaPredicted RBP12.13□□□□□ -0.47
NUP54-213ENST00000513352 C11orf54Q9H0W9 315 aaPredicted RBP12.13□□□□□ -0.47
NUP54-213ENST00000513352 OR8U9P0C7N5 309 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 FCGR2CP31995 323 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 ETV6P41212 452 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 REG1BP48304 166 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 RFX2P48378 723 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 INPP1P49441 399 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 ARHGDIBP52566 201 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 TSPAN5P62079 268 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 ACTBL2Q562R1 376 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 RNASE10Q5GAN6 216 aaKnown RBP12.12□□□□□ -0.47
NUP54-213ENST00000513352 LY6G6FQ5SQ64 297 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 LDLRAD2Q5SZI1 272 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 LYSMD2Q8IV50 215 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 OR8U1Q8NH10 309 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 MALSU1Q96EH3 234 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 ABHD14BQ96IU4 210 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 ZNF48Q96MX3 618 aaPredicted RBP12.12□□□□□ -0.47
NUP54-213ENST00000513352 TNFRSF19Q9NS68 423 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 ZNF221Q9UK13 617 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 RNF150Q9ULK6 438 aa12.12□□□□□ -0.47
NUP54-213ENST00000513352 HSD17B6O14756 317 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 LANCL1O43813 399 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 CD3DP04234 171 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 IFNA6P05013 189 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 CSF1P09603 554 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 GPR12P47775 334 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 TAS2R19P59542 299 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 FXYD4P59646 89 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 HERV-K104P61576 105 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 ZNF45Q02386 682 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 SSBP1Q04837 148 aaKnown RBP12.11□□□□□ -0.47
NUP54-213ENST00000513352 DYNAPQ8N1N2 210 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 TMEM229BQ8NBD8 167 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 THAP7Q9BT49 309 aaPredicted RBP12.11□□□□□ -0.47
NUP54-213ENST00000513352 SRRQ9GZT4 340 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 OR2D2Q9H210 308 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms