RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ADIRFQ15847 76 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 OR10J5Q8NHC4 309 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 UHRF2Q96PU4 802 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 LRFN3Q9BTN0 628 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 ZFP30Q9Y2G7 519 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 hCG_38984A0A1B0GV85 526 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 LMX1BO60663 402 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 OR2J2O76002 312 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 DFFBO76075 338 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1-39P01597 117 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1D-39P04432 117 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 OR5D13Q8NGL4 314 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 PATE1Q8WXA2 126 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SPIN2AQ99865 258 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SPIN2BQ9BPZ2 258 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 H0Y980 276 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 OR7C1O76099 320 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 BMI1P35226 326 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 RPS27P42677 84 aaKnown RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 S100A7AQ86SG5 101 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 RPP25LQ8N5L8 163 aaKnown RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SLC38A9Q8NBW4 561 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 OR10A7Q8NGE5 316 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 ARHGAP5-AS1Q96IT6 56 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1-6A0A0C4DH72 117 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 MARCH11A6NNE9 402 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 INS-IGF2F8WCM5 200 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 TNFSF13O75888 250 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 IL3RAP26951 378 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF816Q0VGE8 651 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 PLXDC2Q6UX71 529 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SMIM15Q7Z3B0 74 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 C1QL2Q7Z5L3 287 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 ZIC4Q8N9L1 334 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 OR10X1Q8NGY0 326 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 OR5P3Q8WZ94 311 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 RPRMQ9NS64 109 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 ERRFI1Q9UJM3 462 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 FAM221AA4D161 298 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 PDCD6O75340 191 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 BCKDHBP21953 392 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 REG1BP48304 166 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 AAED1Q7RTV5 226 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 MKXQ8IYA7 352 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 C1orf87Q8N0U7 546 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 AKR7LQ8NHP1 331 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 RAB40CQ96S21 281 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 GPR35Q9HC97 309 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SLC39A9Q9NUM3 307 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 GAB2Q9UQC2 676 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SSUH2Q9Y2M2 353 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 AQP7P3A6NL99 342 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SDCBPO00560 298 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 PF4V1P10720 104 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 C17orf67Q0P5P2 114 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 MFAP5Q13361 173 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 ACOT6Q3I5F7 207 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF468Q5VIY5 522 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 RTN4RL2Q86UN3 420 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 BAGE3Q86Y29 109 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 BAGE2Q86Y30 109 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 OR8B12Q8NGG6 310 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SPACA5Q96QH8 159 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 SPSB2Q99619 263 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 MSL2Q9HCI7 577 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 HSPB7Q9UBY9 170 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 FAM90A9PA6NNJ1 464 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 SPRY1O43609 319 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-220ENST00000471834 CNIH1O95406 144 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 FHITP49789 147 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 RPS16P62249 146 aaKnown RBP4.56□□□□□ -1.68
SYNE1-220ENST00000471834 MEF2BQ02080 365 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-220ENST00000471834 SPINK9Q5DT21 86 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 SLC35G3Q8N808 338 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF383Q8NA42 475 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 OR51E1Q8TCB6 317 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 WIPF2Q8TF74 440 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-220ENST00000471834 ISOC2Q96AB3 205 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 LURAP1Q96LR2 239 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 RBKSQ9H477 322 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 DUSP13Q9UII6 198 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 WDR83OSQ9Y284 106 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV3D-15A0A087WSY6 115 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 C9JCJ5 164 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 E9PLN8 166 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 GPM6AP51674 278 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 KISS1Q15726 138 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 GBGT1Q8N5D6 347 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 CCL4L1Q8NHW4 92 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 MAGT1Q9H0U3 335 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 FSCN3Q9NQT6 498 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 ONECUT1Q9UBC0 465 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 A0A1W2PP11 408 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 C1QL1O75973 258 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 YIF1AO95070 293 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 APOA2P02652 100 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 APOBEC3AP31941 199 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-220ENST00000471834 OR2B8PP59922 312 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 HERPUD1Q15011 391 aa4.56□□□□□ -1.68
SYNE1-220ENST00000471834 LHFPL2Q6ZUX7 228 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms