RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 IL15RAQ13261 267 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 SSPNQ14714 243 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 H1FOOQ8IZA3 346 aaPredicted RBP13.8□□□□□ -0.2
PCDH1-203ENST00000394536 DEFB108BQ8NET1 73 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 RBKSQ9H477 322 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 SMDT1Q9H4I9 107 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 SZT2Q5T011 3432 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 DENND4AQ7Z401 1863 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 CXorf65A6NEN9 183 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 KLF7O75840 302 aaPredicted RBP13.8□□□□□ -0.2
PCDH1-203ENST00000394536 CXCL1P09341 107 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 AGAP20933 346 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 RIPPLY2Q5TAB7 128 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 WFIKKN1Q96NZ8 548 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 FUT9Q9Y231 359 aa13.8□□□□□ -0.2
PCDH1-203ENST00000394536 OR5B21A6NL26 309 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 OPN1MWP04001 364 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 OPN1MW2P0DN77 364 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 OPN1MW3P0DN78 364 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 EGR1P18146 543 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 PMS2P11Q13670 270 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 OR4D5Q8NGN0 318 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 MRPL30Q8TCC3 161 aaKnown RBP13.79□□□□□ -0.2
PCDH1-203ENST00000394536 SIRT7Q9NRC8 400 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.79□□□□□ -0.2
PCDH1-203ENST00000394536 SPEGQ15772 3267 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 DVL1O14640 695 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 SPINT2O43291 252 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 CCL11P51671 97 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 PNRC1Q12796 327 aaPredicted RBP13.79□□□□□ -0.2
PCDH1-203ENST00000394536 ZNF705AQ6ZN79 300 aaPredicted RBP13.79□□□□□ -0.2
PCDH1-203ENST00000394536 ZNF826PQ6ZT77 177 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 MRGPRGQ86SM5 289 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 FGFRL1Q8N441 504 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 GPR87Q9BY21 358 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 YKT6O15498 198 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 OTX1P32242 354 aaPredicted RBP13.79□□□□□ -0.2
PCDH1-203ENST00000394536 GAMTQ14353 236 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 C10orf91Q5T1B1 145 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 OR2M7Q8NG81 312 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 TUBA4BQ9H853 241 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 MPC1Q9Y5U8 109 aa13.79□□□□□ -0.2
PCDH1-203ENST00000394536 SPINK4O60575 86 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 UCP1P25874 307 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 NTF4P34130 210 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 ICAM4Q14773 271 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 MDP1Q86V88 176 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 OR5D13Q8NGL4 314 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 RNF122Q9H9V4 155 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 TIMM8BQ9Y5J9 83 aaPredicted RBP13.78□□□□□ -0.2
PCDH1-203ENST00000394536 ACACAQ13085 2346 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 FCGR3BO75015 233 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 GLIPR1P48060 266 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 HTD2P86397 168 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 FAM78BQ5VT40 261 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 SLC35E3Q7Z769 313 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 RCC1LQ96I51 464 aaKnown RBP13.78□□□□□ -0.2
PCDH1-203ENST00000394536 ARRDC1-AS1Q9H2J1 176 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 VSIRQ9H7M9 311 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 DEPPQ9NTK1 212 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 ZNF716A6NP11 495 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 GPR12P47775 334 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 ERVFRD-1P60508 538 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 RPL19P84098 196 aaKnown RBP13.78□□□□□ -0.2
PCDH1-203ENST00000394536 TRA2AQ13595 282 aaKnown RBP eCLIP13.78□□□□□ -0.2
PCDH1-203ENST00000394536 RAB31Q13636 194 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 C16orf82Q7Z2V1 217 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 TRIB1Q96RU8 372 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 HIPK2Q9H2X6 1198 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 ANAPC10Q9UM13 185 aa13.78□□□□□ -0.2
PCDH1-203ENST00000394536 HEATR1Q9H583 2144 aaKnown RBP13.78□□□□□ -0.2
PCDH1-203ENST00000394536 ARHGAP21Q5T5U3 1957 aa13.77□□□□□ -0.2
PCDH1-203ENST00000394536 WNK2Q9Y3S1 2297 aa13.77□□□□□ -0.2
PCDH1-203ENST00000394536 PTBP3O95758 552 aaKnown RBP13.77□□□□□ -0.2
PCDH1-203ENST00000394536 KITLGP21583 273 aa13.77□□□□□ -0.2
PCDH1-203ENST00000394536 MEOX1P50221 254 aa13.77□□□□□ -0.2
PCDH1-203ENST00000394536 NAT8Q9UHE5 227 aa13.77□□□□□ -0.2
PCDH1-203ENST00000394536 FAM3BP58499 235 aaPredicted RBP13.77□□□□□ -0.21
PCDH1-203ENST00000394536 PPP1CBP62140 327 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 HEPN1Q6WQI6 88 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 BAGE3Q86Y29 109 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 BAGE2Q86Y30 109 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 ABHD14BQ96IU4 210 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 PCGF1Q9BSM1 259 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 MSL2Q9HCI7 577 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 TMEM30CPA0ZSE6 113 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 J3QT63 122 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 OR2H2O95918 312 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 PMS2CLQ68D20 193 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 DHRS13Q6UX07 377 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 PPP1R32Q7Z5V6 425 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 OR52L2PQ8NGH6 319 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 MUCL1Q96DR8 90 aa13.77□□□□□ -0.21
PCDH1-203ENST00000394536 HOXA5P20719 270 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 RTP5Q14D33 572 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 NUFIP2Q7Z417 695 aaKnown RBP13.76□□□□□ -0.21
PCDH1-203ENST00000394536 CLDND2Q8NHS1 167 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 DTD1Q8TEA8 209 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 TMEM18Q96B42 140 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 PRDM14Q9GZV8 571 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms