RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SSSCA1O60232 199 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 NXPH2O95156 264 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 OR2H2O95918 312 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 SPP1P10451 314 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 SELEP16581 610 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 VAMP2P63027 116 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 NMSQ5H8A3 153 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 MOB1BQ7L9L4 216 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 WFDC8Q8IUA0 241 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 IL22RA2Q969J5 263 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 ABHD14BQ96IU4 210 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 TREM2Q9NZC2 230 aa13.07□□□□□ -0.32
CCDC40-202ENST00000374876 IQCF6A8MYZ5 107 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 SLC33A1O00400 549 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-202ENST00000374876 SNAPINO95295 136 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 TSPAN15O95858 294 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 OR8U9P0C7N5 309 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 DANCRP0C864 163 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 F2RP25116 425 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 ERVK11-1P61568 191 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 ZNF154Q13106 437 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 OR8G1Q15617 311 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 CXorf66Q5JRM2 361 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-202ENST00000374876 HSD17B11Q8NBQ5 300 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 OR8U1Q8NH10 309 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 MAGT1Q9H0U3 335 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 TRAPPC2LQ9UL33 140 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 PIGBOS1A0A0B4J2F0 54 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 IGHV3-64DA0A0J9YX35 117 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 FAM24AA6NFZ4 105 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 TRIM77I1YAP6 450 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 SH2D1BO14796 132 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 GRPP07492 148 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 SFTA3P0C7M3 94 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 PGA5P0DJD9 388 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 HOXB1P14653 301 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-202ENST00000374876 CD80P33681 288 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 ZNF616Q08AN1 781 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 PSG7Q13046 419 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 ALKBH6Q3KRA9 238 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 DCHS2Q6V1P9 2916 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 ZNF497Q6ZNH5 498 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 PRR18Q8N4B5 295 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 CLRN3Q8NCR9 226 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 FAM222BQ8WU58 562 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 SLC25A31Q9H0C2 315 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 C11orf1Q9H5F2 150 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 PLEKHF2Q9H8W4 249 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 OR1A1Q9P1Q5 309 aa13.06□□□□□ -0.32
CCDC40-202ENST00000374876 TRAV39A0A0B4J263 110 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 OR5H1A6NKK0 313 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 NPIPB11E5RHQ5 1161 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 PRH1P02810 166 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 CD5P06127 495 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 SERPINE2P07093 398 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 CAMLGP49069 296 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 RAB5CP51148 216 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 DVL1P1P54792 670 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-202ENST00000374876 OR10V1Q8NGI7 309 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 OR51H1Q8NH63 302 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 LYPD6BQ8NI32 183 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 PLPPR1Q8TBJ4 325 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 KLF14Q8TD94 323 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-202ENST00000374876 SH3BGRL3Q9H299 93 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 OBP2BQ9NPH6 170 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 LYRM2Q9NU23 88 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-202ENST00000374876 PURGQ9UJV8 347 aaKnown RBP13.05□□□□□ -0.32
CCDC40-202ENST00000374876 IGSF23A1L1A6 192 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 TMEM210A6NLX4 147 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 HSPA12AO43301 675 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 F12P00748 615 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-202ENST00000374876 CBR1P16152 277 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 ZNF266Q14584 549 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 CLINT1Q14677 625 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 ZNF146Q15072 292 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 MIDNQ504T8 468 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 TIMM23BQ5SRD1 257 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 SHEQ5VZ18 495 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 TMEM88Q6PEY1 159 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 FIP1L1Q6UN15 594 aaKnown RBP13.05□□□□□ -0.32
CCDC40-202ENST00000374876 WDR31Q8NA23 367 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 MUCL1Q96DR8 90 aa13.05□□□□□ -0.32
CCDC40-202ENST00000374876 CACNA1DQ01668 2161 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 H0YL77 283 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 WRBO00258 174 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 TOR1AO14656 332 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 SIAH2O43255 324 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 OMGP23515 440 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 MPV17P39210 176 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 ID3Q02535 119 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 TAAR3PQ9P1P4 343 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 CACFD1Q9UGQ2 172 aa13.04□□□□□ -0.32
CCDC40-202ENST00000374876 STRAPQ9Y3F4 350 aaKnown RBP13.04□□□□□ -0.32
CCDC40-202ENST00000374876 RBM7Q9Y580 266 aaKnown RBP13.04□□□□□ -0.32
CCDC40-202ENST00000374876 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-202ENST00000374876 A6NNC1 897 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 PITX3O75364 302 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 IGKV3-15P01624 115 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 MMP9P14780 707 aa13.03□□□□□ -0.32
CCDC40-202ENST00000374876 TLE4Q04727 773 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 244.5 ms