RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZNF93P35789 620 aaPredicted RBP8.81□□□□□ -1
VPS39-214ENST00000614932 GFRA1P56159 465 aa8.81□□□□□ -1
VPS39-214ENST00000614932 LCN6P62502 163 aa8.81□□□□□ -1
VPS39-214ENST00000614932 RTP5Q14D33 572 aa8.81□□□□□ -1
VPS39-214ENST00000614932 HIST3H3Q16695 136 aa8.81□□□□□ -1
VPS39-214ENST00000614932 C1QL3Q5VWW1 255 aa8.81□□□□□ -1
VPS39-214ENST00000614932 OTPQ5XKR4 325 aa8.81□□□□□ -1
VPS39-214ENST00000614932 WDR82Q6UXN9 313 aa8.81□□□□□ -1
VPS39-214ENST00000614932 OR5H2Q8NGV7 314 aa8.81□□□□□ -1
VPS39-214ENST00000614932 ATP5SQ99766 215 aa8.81□□□□□ -1
VPS39-214ENST00000614932 DHDHQ9UQ10 334 aa8.81□□□□□ -1
VPS39-214ENST00000614932 ARID1BQ8NFD5 2236 aaPredicted RBP8.81□□□□□ -1
VPS39-214ENST00000614932 SH2D1BO14796 132 aa8.81□□□□□ -1
VPS39-214ENST00000614932 WDR38Q5JTN6 314 aa8.81□□□□□ -1
VPS39-214ENST00000614932 C9orf135Q5VTT2 229 aa8.81□□□□□ -1
VPS39-214ENST00000614932 PTCRAQ6ISU1 281 aaPredicted RBP8.81□□□□□ -1
VPS39-214ENST00000614932 ZPLD1Q8TCW7 415 aa8.81□□□□□ -1
VPS39-214ENST00000614932 SPSB1Q96BD6 273 aa8.81□□□□□ -1
VPS39-214ENST00000614932 PHF7Q9BWX1 381 aaPredicted RBP8.81□□□□□ -1
VPS39-214ENST00000614932 UBE2ZQ9H832 354 aaPredicted RBP8.81□□□□□ -1
VPS39-214ENST00000614932 FSCN3Q9NQT6 498 aa8.81□□□□□ -1
VPS39-214ENST00000614932 TAS2R4Q9NYW5 299 aa8.81□□□□□ -1
VPS39-214ENST00000614932 RNF114Q9Y508 228 aa8.81□□□□□ -1
VPS39-214ENST00000614932 THADAQ6YHU6 1953 aa8.81□□□□□ -1
VPS39-214ENST00000614932 DUXBA0A1W2PPF3 345 aa8.81□□□□□ -1
VPS39-214ENST00000614932 LRRC3CA6NJW4 275 aa8.81□□□□□ -1
VPS39-214ENST00000614932 PITX3O75364 302 aa8.81□□□□□ -1
VPS39-214ENST00000614932 NKX2-2O95096 273 aa8.81□□□□□ -1
VPS39-214ENST00000614932 RAB31Q13636 194 aa8.81□□□□□ -1
VPS39-214ENST00000614932 C1orf100Q5SVJ3 147 aa8.81□□□□□ -1
VPS39-214ENST00000614932 DEFB125Q8N687 156 aa8.81□□□□□ -1
VPS39-214ENST00000614932 OR2I1PQ8NGU4 316 aa8.81□□□□□ -1
VPS39-214ENST00000614932 GTSF1LQ9H1H1 148 aa8.81□□□□□ -1
VPS39-214ENST00000614932 GPR27Q9NS67 375 aa8.81□□□□□ -1
VPS39-214ENST00000614932 DNAJB12Q9NXW2 375 aaKnown RBP8.81□□□□□ -1
VPS39-214ENST00000614932 PLEK2Q9NYT0 353 aa8.81□□□□□ -1
VPS39-214ENST00000614932 ANAPC10Q9UM13 185 aa8.81□□□□□ -1
VPS39-214ENST00000614932 CEBPZOSA8MTT3 80 aa8.8□□□□□ -1
VPS39-214ENST00000614932 TMEM150CB9EJG8 249 aa8.8□□□□□ -1
VPS39-214ENST00000614932 KBTBD11O94819 623 aa8.8□□□□□ -1
VPS39-214ENST00000614932 HAND1O96004 215 aa8.8□□□□□ -1
VPS39-214ENST00000614932 HLA-HP01893 362 aa8.8□□□□□ -1
VPS39-214ENST00000614932 H2BFMP0C1H6 154 aa8.8□□□□□ -1
VPS39-214ENST00000614932 IGFBP3P17936 291 aaPredicted RBP8.8□□□□□ -1
VPS39-214ENST00000614932 KITLGP21583 273 aa8.8□□□□□ -1
VPS39-214ENST00000614932 TMEM267Q0VDI3 215 aaPredicted RBP8.8□□□□□ -1
VPS39-214ENST00000614932 PRTGQ2VWP7 1150 aa8.8□□□□□ -1
VPS39-214ENST00000614932 MRGPRGQ86SM5 289 aa8.8□□□□□ -1
VPS39-214ENST00000614932 OR8I2Q8N0Y5 310 aa8.8□□□□□ -1
VPS39-214ENST00000614932 ARHGEF39Q8N4T4 335 aa8.8□□□□□ -1
VPS39-214ENST00000614932 VSTM2LQ96N03 204 aa8.8□□□□□ -1
VPS39-214ENST00000614932 SSBP4Q9BWG4 385 aaPredicted RBP8.8□□□□□ -1
VPS39-214ENST00000614932 ZNF665Q9H7R5 613 aa8.8□□□□□ -1
VPS39-214ENST00000614932 RP1P56715 2156 aa8.8□□□□□ -1
VPS39-214ENST00000614932 NKX2-6A6NCS4 301 aa8.8□□□□□ -1
VPS39-214ENST00000614932 ST8SIA3O43173 380 aa8.8□□□□□ -1
VPS39-214ENST00000614932 ZNF253O75346 499 aa8.8□□□□□ -1
VPS39-214ENST00000614932 CRISP2P16562 243 aa8.8□□□□□ -1
VPS39-214ENST00000614932 CBLN3Q6UW01 205 aa8.8□□□□□ -1
VPS39-214ENST00000614932 CDC20BQ86Y33 519 aa8.8□□□□□ -1
VPS39-214ENST00000614932 BCORP1Q8N888 145 aa8.8□□□□□ -1
VPS39-214ENST00000614932 OR2Z1Q8NG97 314 aa8.8□□□□□ -1
VPS39-214ENST00000614932 ZNF524Q96C55 264 aa8.8□□□□□ -1
VPS39-214ENST00000614932 FAM103A1Q9BTL3 118 aaKnown RBP8.8□□□□□ -1
VPS39-214ENST00000614932 COL4A2P08572 1712 aa8.79□□□□□ -1
VPS39-214ENST00000614932 METTL12A8MUP2 240 aa8.79□□□□□ -1
VPS39-214ENST00000614932 FSTP19883 344 aa8.79□□□□□ -1
VPS39-214ENST00000614932 ARL4DP49703 201 aa8.79□□□□□ -1
VPS39-214ENST00000614932 ZNF787Q6DD87 383 aa8.79□□□□□ -1
VPS39-214ENST00000614932 ATG4DQ86TL0 474 aaPredicted RBP8.79□□□□□ -1
VPS39-214ENST00000614932 BAGE3Q86Y29 109 aa8.79□□□□□ -1
VPS39-214ENST00000614932 BAGE2Q86Y30 109 aa8.79□□□□□ -1
VPS39-214ENST00000614932 FOXN4Q96NZ1 517 aa8.79□□□□□ -1
VPS39-214ENST00000614932 A0A0B4J2E0 115 aa8.79□□□□□ -1
VPS39-214ENST00000614932 A0A1B0GX12 115 aa8.79□□□□□ -1
VPS39-214ENST00000614932 A0A1W2PR77 199 aa8.79□□□□□ -1
VPS39-214ENST00000614932 ALG1L2C9J202 215 aa8.79□□□□□ -1
VPS39-214ENST00000614932 RBMXL2O75526 392 aaKnown RBP8.79□□□□□ -1
VPS39-214ENST00000614932 GPX1P07203 203 aa8.79□□□□□ -1
VPS39-214ENST00000614932 UCP1P25874 307 aa8.79□□□□□ -1
VPS39-214ENST00000614932 CD27P26842 260 aa8.79□□□□□ -1
VPS39-214ENST00000614932 CD1BP29016 333 aa8.79□□□□□ -1
VPS39-214ENST00000614932 GNMTQ14749 295 aa8.79□□□□□ -1
VPS39-214ENST00000614932 CD226Q15762 336 aa8.79□□□□□ -1
VPS39-214ENST00000614932 PHYHD1Q5SRE7 291 aa8.79□□□□□ -1
VPS39-214ENST00000614932 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.79□□□□□ -1
VPS39-214ENST00000614932 FAM78BQ5VT40 261 aa8.79□□□□□ -1
VPS39-214ENST00000614932 OR2C3Q8N628 320 aa8.79□□□□□ -1
VPS39-214ENST00000614932 SLC25A44Q96H78 314 aaPredicted RBP8.79□□□□□ -1
VPS39-214ENST00000614932 TAAR6Q96RI8 345 aa8.79□□□□□ -1
VPS39-214ENST00000614932 VN1R1Q9GZP7 353 aa8.79□□□□□ -1
VPS39-214ENST00000614932 ZDHHC11Q9H8X9 412 aa8.79□□□□□ -1
VPS39-214ENST00000614932 PEF1Q9UBV8 284 aaKnown RBP8.79□□□□□ -1
VPS39-214ENST00000614932 RHBDD3Q9Y3P4 386 aa8.79□□□□□ -1
VPS39-214ENST00000614932 IGHV3-20A0A0C4DH32 117 aa8.78□□□□□ -1
VPS39-214ENST00000614932 DPRXA6NFQ7 191 aa8.78□□□□□ -1
VPS39-214ENST00000614932 GAGE10A6NGK3 116 aa8.78□□□□□ -1
VPS39-214ENST00000614932 HS3ST1O14792 307 aa8.78□□□□□ -1
VPS39-214ENST00000614932 HPNP05981 417 aa8.78□□□□□ -1
VPS39-214ENST00000614932 LHX2P50458 406 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms